Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L01
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 33 0.30
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 30 2.8
07_01_1106 - 10187609-10190041,10190292-10191932 29 6.5
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678... 29 6.5
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 28 8.6
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 28 8.6
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 28 8.6
01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271 28 8.6
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 33.1 bits (72), Expect = 0.30
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 288 GQSAXHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQDPHLLSKPLNALGVLTSK 467
G+ H G P T+ G + GLN S ++ + G + LL +L L +
Sbjct: 356 GRVFSHGGYFPQATNYGGPFPSFGLNGTS-SIPMEKGRRRGRGNALLCSCNGSLDFLNEQ 414
Query: 468 GQKVPDAIGLEPKPGPVGGSSDEKPALGL 554
+ P A PK P G DEKP+ G+
Sbjct: 415 SRG-PRAT--RPKKQPEDGGKDEKPSAGV 440
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 550 PRAGFSSELPPTGPGFGSNP 491
P G S +PP GPG+G NP
Sbjct: 312 PPWGHPSNVPPGGPGYGGNP 331
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 249 PVS-GALSTLGLRXGQSAXHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQ 413
PVS G LS L L L P GSL+NL L+D +G+ LQ
Sbjct: 423 PVSFGDLSNLRLLDLSGCRSLRLFPSSFVNLGSLENLNLSDCIRLMGIPQNFEDLQ 478
>01_07_0311 +
42667114-42667132,42667336-42667367,42667449-42667822,
42667895-42668028,42668147-42668303,42668994-42669098,
42669342-42669645,42670404-42670478,42671467-42672589,
42673686-42673727,42674017-42674111,42674199-42674239,
42674375-42674414
Length = 846
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 283 LRPKVLRA-PLTGLSPMIPKGLFSISSGLLFNTGNGLLMDISE 158
LR K+ + PL ++ I +GL ++ +G ++ GNG +DI E
Sbjct: 397 LRVKIAHSLPLDQIARSIIRGLSALKAGRIWRVGNGSSIDIWE 439
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = -3
Query: 460 VNTPNAFKGFERRCGSCSDEIPLLSPKASERSFNPRLSSEPLALVRPGISPA*XADWPXL 281
+ + NAF G +P+++P +S R+ N LS + + PG P
Sbjct: 393 IQSLNAFSSVAHISGMGLKVVPMIAPFSSLRAIN--LSGNFIVHISPGSLPKGLHSLDLS 450
Query: 280 RPKVLRAPLTGLSPMIPKGLFSISSGLLFNTGNGL 176
R K+ A + GL + + ++S + G+GL
Sbjct: 451 RNKI--ANIEGLRELTKLRVLNLSYNRISRIGHGL 483
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 184 NGLLMDISERSP-GVNGCRVNKRLRXIITNNICCVSAMMSIRD 59
+ +L ++ E++ +NGCRV ++ ++ N + C S ++ D
Sbjct: 179 DSILHNVDEQTVRSLNGCRVTDKILRLVPNILVCTSCIVYFSD 221
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 222 KPLGIIGDKPVSGALSTLGLRXGQSAXHAGLIPGLTSASGSLDNLGLNDL 371
KP+ + D + +LST GQSA IP TSA+G+ L NDL
Sbjct: 563 KPISSL-DMFLQVSLSTSAKTNGQSATLNVRIPSWTSANGAKATLNDNDL 611
>01_05_0767 - 25034577-25034716,25035231-25035300,25035960-25036271
Length = 173
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 167 HFGKEPRSQWMQSKQTATPDNH-QQYLLCKRHDV 69
H G R WM+ T PD Q C RH++
Sbjct: 92 HTGYNQRGPWMRKVSTLAPDKRGDQIRTCGRHEI 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,571,569
Number of Sequences: 37544
Number of extensions: 394328
Number of successful extensions: 939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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