Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_L01
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X87344-9|CAA60789.1| 273|Homo sapiens DOB protein. 31 7.4
X66401-5|CAA47028.1| 273|Homo sapiens class II beta chain protein. 31 7.4
X03066-1|CAA26870.1| 273|Homo sapiens protein ( Human mRNA for ... 31 7.4
M26040-1|AAA59718.1| 273|Homo sapiens HLA-DOB protein. 31 7.4
L29472-1|AAA59717.1| 273|Homo sapiens protein ( Human MHC class... 31 7.4
BX296564-6|CAM26040.1| 273|Homo sapiens major histocompatibilit... 31 7.4
BC006097-1|AAH06097.1| 273|Homo sapiens major histocompatibilit... 31 7.4
AY645723-1|AAV97948.1| 273|Homo sapiens MHC class II antigen pr... 31 7.4
AL671681-5|CAI17709.1| 273|Homo sapiens major histocompatibilit... 31 7.4
AL669918-1|CAI18134.1| 273|Homo sapiens major histocompatibilit... 31 7.4
CR541832-1|CAG46631.1| 273|Homo sapiens HLA-DOB protein. 30 9.8
CR541811-1|CAG46610.1| 273|Homo sapiens HLA-DOB protein. 30 9.8
>X87344-9|CAA60789.1| 273|Homo sapiens DOB protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>X66401-5|CAA47028.1| 273|Homo sapiens class II beta chain protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>X03066-1|CAA26870.1| 273|Homo sapiens protein ( Human mRNA for
HLA-D class II antigen DO beta chain. ).
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>M26040-1|AAA59718.1| 273|Homo sapiens HLA-DOB protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>L29472-1|AAA59717.1| 273|Homo sapiens protein ( Human MHC class II
HLA DO-beta gene (DR4/Dw4,DPw4 homozygote), complete
cds. ).
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>BX296564-6|CAM26040.1| 273|Homo sapiens major histocompatibility
complex class II DO beta protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>BC006097-1|AAH06097.1| 273|Homo sapiens major histocompatibility
complex, class II, DO beta protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>AY645723-1|AAV97948.1| 273|Homo sapiens MHC class II antigen
protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>AL671681-5|CAI17709.1| 273|Homo sapiens major histocompatibility
complex, class II, DO beta protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>AL669918-1|CAI18134.1| 273|Homo sapiens major histocompatibility
complex, class II, DO beta protein.
Length = 273
Score = 30.7 bits (66), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SPVS WR S Y W LSG+A LL
Sbjct: 206 LLSPVSVEWRAQSEYSWRKMLSGIAAFLL 234
>CR541832-1|CAG46631.1| 273|Homo sapiens HLA-DOB protein.
Length = 273
Score = 30.3 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SP+S WR S Y W LSG+A LL
Sbjct: 206 LLSPISVEWRAQSEYSWRKMLSGIAAFLL 234
>CR541811-1|CAG46610.1| 273|Homo sapiens HLA-DOB protein.
Length = 273
Score = 30.3 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 52 IXSPVSTSWRLHSRYCW--*LSGVAVCLL 132
+ SP+S WR S Y W LSG+A LL
Sbjct: 206 LLSPISVEWRAQSEYSWRKMLSGIAAFLL 234
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,315,386
Number of Sequences: 237096
Number of extensions: 2223035
Number of successful extensions: 4571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4555
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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