Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K24
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   3.8  

>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -1

Query: 345 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 166
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 165 SSLR 154
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -3

Query: 352 RDGESRVYPAVR-VHNGERDFINDAVN 275
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 427 SSCPSTCGPTPGLHVILSDAADKSVRDGESRVY 329
           SS PS   P+P L   + DAA+K +R    RVY
Sbjct: 314 SSYPSNAQPSPWL---MLDAANKMIRVARDRVY 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,823
Number of Sequences: 5004
Number of extensions: 56614
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)