Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K23
         (1027 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = +2

Query: 695 LXXXPPXPPPPFXXPCXXFTXXTLXPPFXPLXGXXGAPFLXXPPXXXVFPXXXGXGXPPP 874
           L   PP PPP    P        + PP         AP +  PP     P   G G PPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPP---------APIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +1

Query: 676 PXXXSPPXKXPPXAPPPFXXPLXXXYXXNPXPPLXPPXGXXXGXFPXXPP 825
           P    P    P  AP P   P        P PP  PP     G  P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 32/110 (29%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
 Frame = +2

Query: 581 PPPPPXXAXX--KNSXPXIXXGGXXPXXGIXKXFPGR----FPPLXXX-----PPXPPPP 727
           PPPPP  A    +   P                 PGR     PPL        PP P PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 728 FXXPCXXFTXXTLXPPFXPLXGXXGAPFLXXPPXXXVF-PXXXGXGXPPP 874
              P    +     PP  P+ G   AP L  PP   +  P   G    PP
Sbjct: 422 SLPPSAPPSLPPSAPPSLPM-GAPAAPPL--PPSAPIAPPLPAGMPAAPP 468



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
 Frame = +2

Query: 581 PPPPPXXAXXKNSXPXIXXGG-----XXPXXGIXKXFPGR--FPPLXXXPPXPPPPFXXP 739
           PPPPP  +      P I  G        P         G    PP     P PPPP   P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
 Frame = +2

Query: 572 PXXPPPPPXX---AXXKNSXPXIXXGGXXPXXGIXKXF-PGRFPPLXXXPPXPPPPFXXP 739
           P  PPPPP     A   N        G      I   + P +  PL   PP PPPP   P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPP-PPPPTLPP 248


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 771  PPFXPXGGXXGXLSXXXPPXXXFSXXPGGXAXPPPXXGGXXXPKPPP 911
            PP  P       +S   PP    S  P   A  PP   G     PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA--PPMPAGPPSAPPPP 1734


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 786 RGXKGGXRVXXVXXXQGXXKGGGGXGGXFXRGGXRPG 676
           RG +GG R        G    GGG GG   RGG R G
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGGRGG--ARGGGRGG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,606
Number of Sequences: 5004
Number of extensions: 36024
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)