Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K21
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...   101   1e-22
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.47 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   1.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   4.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   7.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.6  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   7.6  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score =  101 bits (242), Expect = 1e-22
 Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +1

Query: 115 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 294
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 295 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQXTDYDRFK-LXAARVKRNR 471
           K    A + +V K W    +  KW  S WA+KL  K+ R+Q  D+DRF  +   + +R +
Sbjct: 64  KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123

Query: 472 ARTAVFXXLK 501
              AV   LK
Sbjct: 124 VNVAVAKALK 133


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 121 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 207
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 121 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 207
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 316 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQXTDYDRFKLXAARVKRNRARTA 483
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA 758


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/72 (25%), Positives = 27/72 (37%)
 Frame = -2

Query: 636 LVKNLSQKQNXXFLAXFWXLXGAHFFXSRFRDIFFAEGXSXRSLHLQXXEYGSPGTVPLN 457
           L+ +L  +     +   + L   HF    F+  +   G +  S H    E+GS     LN
Sbjct: 419 LISSLLNRCTLSSIQAVFLLSLYHFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLN 478

Query: 456 SCSX*LEPIVIC 421
             S     I IC
Sbjct: 479 EVSTEETSIRIC 490


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 242 TPLPGPSTSARVWSITSTTLTNFPFNGPSATRATRPGSTYRAKGMTF 102
           TP  G ST+    +++ TT    PF   +AT  T PGS     G  F
Sbjct: 242 TPAFGASTTPFGQNLSGTTNNATPFGTSNATNTT-PGSGLFGGGSAF 287


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 133 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 258
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,967
Number of Sequences: 5004
Number of extensions: 42569
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)