Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K21
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   103   2e-22
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    28   7.2  
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    28   9.5  
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    28   9.5  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  103 bits (246), Expect = 2e-22
 Identities = 53/121 (43%), Positives = 75/121 (61%)
 Frame = +1

Query: 109 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 288
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 289 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQXTDYDRFKLXAARVKRN 468
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA+ TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 469 R 471
           R
Sbjct: 121 R 121


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 370 ESQWAQKLANKEKRAQXTDYDRFKLXAARVKRNRARTAVFXXLKVKAA 513
           E+QWA     ++ RA  T+YDR K    R+      T     L V  A
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMA 854


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +1

Query: 283 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQXTDYDRFKLXAAR 456
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K  A +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 457 VKRNRARTAVFXXLKVKAAXAXTFGKKNIP 546
           VK+ ++   +      K A +    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +1

Query: 283 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQXTDYDRFKLXAAR 456
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K  A +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 457 VKRNRARTAVFXXLKVKAAXAXTFGKKNIP 546
           VK+ ++   +      K A +    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,742
Number of Sequences: 27780
Number of extensions: 254335
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)