Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K19
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 185 TNSYKYTLPDTFFLQNVQ*THKELQIYNLMN 93
           +N+Y Y      +  N    +K+LQ YN++N
Sbjct: 89  SNNYNYNNNYNNYNNNYNTNYKKLQYYNIIN 119


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  TTGLFTNSRSLDCKSAVLYVFIERFEE 148
           TT +F N  S+D  +  +YV  + F++
Sbjct: 343 TTMVFCNDLSIDRSTNTMYVLSDNFQQ 369


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 KYXFDEFVRLSVGPGGRPRLWVRG 386
           +Y +DE+  +  GPG  P    RG
Sbjct: 567 EYVYDEYTCMDCGPGKWPHEDKRG 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,382
Number of Sequences: 438
Number of extensions: 2645
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)