Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K16
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.012
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.43 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.0  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = +1

Query: 520 PPTPXXSLNDARAPXXPLXPPXPXKXPXXGPAXRPPXFXXXXGXGXXPPPPPP 678
           PP P   +    AP  P+  P P   P  G    PP      G G  PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPA-PI--PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 568 PLXPPXPXKXPXXGPAXRPPXFXXXXGXGXXPPPPPP 678
           P  PP     P   PA  P         G  PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = +1

Query: 520 PPTPXXSLN-DARAPXXPLXPPXPXKXPXXGPAXRPPXFXXXXGXGXXPPPPPPR 681
           PP P  S    A A       P P   P      +PP           PPPPPPR
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
 Frame = +3

Query: 378 KKXXSPPPAXG----GXPXXGXXXXXNP-PPXPSNXPXXGGGXXPXXPXXXGAPNPP 533
           KK   PPP       G P  G     +  PP P        G  P  P    AP PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 22/86 (25%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
 Frame = +3

Query: 288 AXXQXXPXXXPGGGGXXRXKKXXXXGGXXXKKXXSPPP----AXGGXPXXGXXXXXNPPP 455
           A  +  P   P      R K     G         PPP    A G  P         PPP
Sbjct: 305 AANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364

Query: 456 XPSNXPXXGGGXXPXXPXXXGAPNPP 533
            P + P   G   P         NPP
Sbjct: 365 PPRSAPST-GRQPPPLSSSRAVSNPP 389



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = +1

Query: 520 PPTPXXSLNDARAPXXPLXPPXPXKXPXXGPAXRPPXFXXXXGXGXXPPPPPPR 681
           PP    S N +  P     PP P +    G    PP           PPPPPPR
Sbjct: 325 PPIGNGSSNSSLPP-----PPPPPRSNAAGSIPLPPQ------GRSAPPPPPPR 367


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -3

Query: 524 GGXXXSWXXXGXPPPPXGXVGGXRGGVXGXXXPPXGXAPXGXGGG 390
           GG        G PPP  G  GG  GG  G      G    G G G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGF-GGFGGEGHHHGGHGGFGGGPG 231



 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = -3

Query: 530 GVGGXXXSWXXXGXPPPPXGXVGGXRGGVXGXXXPP--XGXAPXGXGG 393
           G GG    +   G P    G  GG  GG+ G    P   G  P G GG
Sbjct: 225 GFGGGPGGFE--GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 22.2 bits (45), Expect(2) = 2.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 677 GGGGGGXXPXPXXXKKXGG 621
           GGG GG  P P      GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGG 212


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 488 PPPPXGXVGGXR--GGVXGXXXPPXGXAPXGXGGG 390
           PPPP G + G R  GG  G    P G    G GGG
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGF-GGRGGG 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,824
Number of Sequences: 5004
Number of extensions: 20560
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)