Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K16
         (982 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   2.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   2.0  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   4.6  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
 Frame = +1

Query: 520 PPTPXXSLNDARAPXXPLXPPXPXKX--PXXGPAXRPPXFXXXXGXGXXPPP 669
           P  P      A  P  P+ PP       P  GPA   P      G G   PP
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = +1

Query: 541 LNDARAPXXPLXPPX---PXKXPXXGPAXRPPXFXXXXGXGXXPPPPPP 678
           LN  RAP  PL P     P   P    A  PP           PPPPPP
Sbjct: 552 LNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPA----------PPPPPP 590


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
 Frame = +2

Query: 503 PXXXGXPQP---PXSL*TMRGPPXXPSXPPXPXKXXXGGPPRXPP 628
           P   G P+P   P +     G P     PP P     GG P  PP
Sbjct: 269 PNPMGGPRPQISPQNSNLSGGMPSGMVGPPRPPMPMQGGAPGGPP 313



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
 Frame = +2

Query: 308 PXXPRGGGGXXXKKKXPXGGXXXKKTXLPP-PXXGGPXXXGGGXXXKPPPXXLQXXXXXX 484
           P  P  G     +   P G     +T  P  P    P    GG   +PP   +       
Sbjct: 178 PARPNPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRP----GGMYPQPPGVPMPMRPQMP 233

Query: 485 XXXXXXPXXXGXPQPPXSL*TMRGPPXXPSXPPXPXKXXXGGP-PRXPP 628
                       P+PP S   M+ PP     PP       GGP P+  P
Sbjct: 234 PGAVPGMQPGMQPRPP-SAQGMQRPPMMGQPPPIRPPNPMGGPRPQISP 281


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 646 GXGXXPPPPPP 678
           G G  PPPPPP
Sbjct: 779 GIGSPPPPPPP 789


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.315    0.148    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,749
Number of Sequences: 2352
Number of extensions: 8811
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 107296839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)