Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K15
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...   120   3e-28
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score =  120 bits (289), Expect = 3e-28
 Identities = 54/123 (43%), Positives = 79/123 (64%)
 Frame = +3

Query: 216 YIQKRITLWDXYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQGLAD 395
           +IQ R+ L+D  + +Y E +A+KP   + +TLPDGK ++  +W+TTP  +A  IS+GLAD
Sbjct: 22  FIQHRLDLFDKLQKEYKESLATKPREEIDITLPDGKVIKGTSWETTPISIAASISKGLAD 81

Query: 396 AXXXARVXNELWDLDRPLKGDCKLELLRWDNTDPQAVFWHSSAHMLGKXMERVYGGCLCY 575
               A V  E WDL RPL+  C L+L  +++ + + VFWHSSAH+LG+  E  +   LC 
Sbjct: 82  RVTVAIVNGEPWDLTRPLEASCTLKLCDFNDPEGKRVFWHSSAHILGEATELSFHCHLCI 141

Query: 576 GRP 584
           G P
Sbjct: 142 GPP 144


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 267 EQIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGI 377
           E  A+K   +V+   P G   E+K WK +   V K +
Sbjct: 27  EHEATKSSETVIEMTPSGPIAESKKWKESIARVVKSV 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,533
Number of Sequences: 5004
Number of extensions: 42319
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)