Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K14
         (1028 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 768 PPXXPPXPPXPPXXXPXPPXXPXXPPPXXXXPXXGP 875
           P    P P   P   P  P     P P    P  GP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 700 PXXPPXXXPPXPPXXPPPPPXP 765
           P  P    PP P   PPP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +1

Query: 685 PXXPPPXXPPXXXPPXPPXXPPPPPXPXRXXXPP 786
           P    P  P    PP  P   PP   P +    P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 571 PPXPEXXXXPXGPPPXXP 624
           PP P     P GPP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 724 PPXPPXXPPPP 756
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 727 PXPPXXPPPPP 759
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 733 PPXXPPPPPXP 765
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.150    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,245
Number of Sequences: 438
Number of extensions: 10729
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34346676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)