Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K13
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   7.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 519 PXXXXXGGGGXXPXPPPPPP 578
           P       GG  P PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPPP 314


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 308 PPXPPXXXXGXPPXPPPXXXXFXXXPP 388
           P  PP    G PP PPP        PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 519 PXXXXXGGGGXXPXPPPPPP 578
           P     G  G  P PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 308 PPXPPXXXXGXPPXPPP 358
           PP PP      PP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 290 GXXXXXPPXPPXXXXGXPPXPPP 358
           G     PP P     G PP PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 555  PXPPPPPPXXXKKK 596
            P PPPPPP   +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 7.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 555 PXPPPPPPXXXKKK 596
           P PPPPP    K+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 20.6 bits (41), Expect(2) = 7.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 543 GGXXPXPPPPPP 578
           G   P  PPPPP
Sbjct: 17  GFEPPSQPPPPP 28


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 26/81 (32%), Positives = 26/81 (32%)
 Frame = -3

Query: 577 GGGGGGXGXXPPPPXXXXXGXXKKXGGVFFXXPPPXXFFFSXKXXGGXPXXXGGKKKHPX 398
           GG GGG G   PPP     G     GG          F        G P   GG    P 
Sbjct: 191 GGFGGGSGG--PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG---GPG 245

Query: 397 FFXWGGXXKXXXXGGGXGGXP 335
            F  GG        GG GG P
Sbjct: 246 GFG-GGLGGFGGGPGGFGGGP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,622
Number of Sequences: 5004
Number of extensions: 27225
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)