Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K11
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.17 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 580 SPDTIVTCAADSTVRARSVCGGATLLECS 666
           SP     CA+ +T+ ARS  G   LL+C+
Sbjct: 744 SPSPAEQCASTTTITARSPQGSQGLLQCA 772


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 671 WQEHSSSVAPPHTLRARTVLSAAHVTIVS 585
           W++H+SS   P  + ++  LS   +T+ +
Sbjct: 688 WEDHASSPLEPSAVPSKFCLSVTLLTVAT 716


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 351 PKPINGDEEYDRQTWV 398
           P  I  D EYD+  WV
Sbjct: 484 PNDIKVDHEYDQNVWV 499


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 609 RQHGAGSQRVRGRHAAG 659
           +QHG G Q   GRH  G
Sbjct: 200 QQHGLGVQNGYGRHLPG 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,378
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)