Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_K09
(1060 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 73 7e-14
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 73 7e-14
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 73 7e-14
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 73 7e-14
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 73 7e-14
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 2e-06
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 7.8
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 64
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 65 STLHLVLRLRGG 76
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3
Query: 363 VEPXLRILAMKYNCXKMIGRQXXMPRLHPRATNLVARXKCG 485
+EP L+ LA KYNC K I R+ RL PRATN + KCG
Sbjct: 78 IEPSLKALASKYNCEKQICRK-CYARLPPRATN-CRKKKCG 116
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 64
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 65 STLHLVLRLRGG 76
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3
Query: 363 VEPXLRILAMKYNCXKMIGRQXXMPRLHPRATNLVARXKCG 485
+EP L+ LA KYNC K I R+ RL PRATN + KCG
Sbjct: 78 IEPSLKALASKYNCEKQICRK-CYARLPPRATN-CRKKKCG 116
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 64
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 65 STLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 93 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 133
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 169 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 209
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 245 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 285
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 321 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 361
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 64
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 65 STLHLVLRLRGG 76
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 83 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 140
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 141 STLHLVLRLRGG 152
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 159 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 216
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 217 STLHLVLRLRGG 228
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 235 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 292
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 293 STLHLVLRLRGG 304
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 311 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 368
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 369 STLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 72.9 bits (171), Expect = 7e-14
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 178 VKLPDTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGRXLS 300
V+ DTI+NVK+ IQDKEGIPPDQQRLIFAGKQLEDGR LS
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 57
Score = 46.8 bits (106), Expect = 5e-06
Identities = 33/72 (45%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 146 TLTGKTITLEV*SFQTLSKM-SKLQSKTRKVFLQTNNVSSLPGNN*KMAALFQDYXIXXE 322
TLTGKTITLEV S T+ + SK+Q K Q + + G + DY I E
Sbjct: 7 TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLEDGRTLSDYNIQKE 64
Query: 323 SXLHLVLRLXGG 358
S LHLVLRL GG
Sbjct: 65 STLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.0 bits (109), Expect = 2e-06
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +1
Query: 190 DTIENVKATIQDKEGIPPDQQRLIFAGKQLEDGR 291
D + +K +++KEGIPP QQRLI+AGKQ+ D +
Sbjct: 21 DKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDK 54
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 183 LHTSNVMVFPVRVXDXIFAXCCSLLKQLXLGKXNXTVXNLRVEIIKGFPY 34
++ SN+ P + + I C +L K L +G V+IIK PY
Sbjct: 125 INFSNIFSLPANILEYISDNCPNL-KALNIGNCGLVEDTGMVQIIKRCPY 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,600
Number of Sequences: 5004
Number of extensions: 36577
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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