Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    52   1e-07
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    33   0.054
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    31   0.29 
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    29   0.66 
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    29   0.66 
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   2.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    26   8.1  

>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +3

Query: 333 LRSTIMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDXYRKEIEVD 488
           +RST +RE+             ALT+Q +   F+++YDPTIED YRK+ E+D
Sbjct: 1   MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEID 52



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 509 ILDTAGTEQFASMRDLYIKXVXA-LXXYILNXPQTFXDINX*RN*LLVSKDQXVXXST-C 682
           +LDTAG E++++MR+ Y++     L  Y +    +F +I+     +L  KD+        
Sbjct: 60  VLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLV 119

Query: 683 GKKG*LXXQXXVAHAEGXAL 742
             K  L  +  V+ AEG  L
Sbjct: 120 ANKCDLEAERVVSRAEGEQL 139


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 399 ALTVQFVSGCFMEKYDPTIEDXYRKEIE 482
           +LTVQ+V   F+E Y PTIE+ + K I+
Sbjct: 21  SLTVQYVENHFVESYYPTIENTFSKNIK 48


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 178 FHVN*NNSNCIALITLKTNA-EHNFHSTDVINTSLVPHEQQVGQIKS 41
           FH + NN  C+AL    T +    F++ D   TSL  H  QVG + S
Sbjct: 416 FHTS-NNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVAS 461


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 402 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXKFW 515
           L + F  G F E Y PT+ + Y  ++EVD        W
Sbjct: 22  LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALW 59


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 402 LTVQFVSGCFMEKYDPTIEDXYRKEIEVDNSPCVXKFW 515
           L + F  G F E Y PT+ + Y  ++EVD        W
Sbjct: 22  LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALW 59


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 482 FDFFSVXILYRRIIFFHKTS*YKLHSQRTLSDPTRTQHDHFK 357
           FD  SV  L+RR +  + ++  K HS++  S+P+    +H +
Sbjct: 104 FDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSVIDKEHLQ 145


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 408 QSTHSFRPHPNPTRPL*IRA 349
           Q THS RP PN + PL +R+
Sbjct: 589 QQTHSSRPTPNASSPLDVRS 608


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 402 LTVQFVSGCFMEKYDPTIEDXYRKEI 479
           L + F SG F E+Y PT+ + Y  +I
Sbjct: 30  LLIVFSSGTFPERYVPTVFENYITDI 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,053
Number of Sequences: 5004
Number of extensions: 48264
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)