Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_K04
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 340 7e-94
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 1.1
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 30 1.9
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 30 1.9
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 4.4
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 4.4
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 7.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 340 bits (836), Expect = 7e-94
Identities = 158/236 (66%), Positives = 187/236 (79%)
Frame = +3
Query: 75 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 254
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 255 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 434
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 435 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 614
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 615 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 782
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SL
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSL 237
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 647 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRXGHXGVHLAAG 787
HHR E AH G HGTH H E H+ H G H + G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHG 446
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Frame = +2
Query: 503 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 679
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 680 LRHCAHQGLHGTHLRHEVEQRVHNRXGHXGVH 775
AH G HG H H G GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 638 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRXGHXGVH 775
A HH E H H G HGTH H GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +2
Query: 686 HCAHQGLHGTHLRHEVEQR-VHNRXGHXGVH 775
H AH HG H RH E H+ H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Frame = +2
Query: 503 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 670
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 671 SRLLRHCAHQGLHGTHLRHEVEQRVHNRXG--HXGVH 775
+ AH G HG H H H G H G H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH 651
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +2
Query: 617 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRXGHXGVH 775
HG G+ G H T L H H G HGTH H GH G H
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHH---GHHGAH 692
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +2
Query: 644 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRXGHXGVH 775
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 802 ADALPAGSEMYAXVPXPIMNTLFNLVAKVCPVESLMCTMSKE 677
A L AG+EM P + L ++ K P + LMC SKE
Sbjct: 297 AAMLDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 802 ADALPAGSEMYAXVPXPIMNTLFNLVAKVCPVESLMCTMSKE 677
A L AG+EM P + L ++ K P + LMC SKE
Sbjct: 297 AAMLDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 387 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 518
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 605 LVYDHGRP*LGACGHHRVPRETSRLLRH 688
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 605 LVYDHGRP*LGACGHHRVPRETSRLLRH 688
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 544 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 380
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,475,957
Number of Sequences: 27780
Number of extensions: 464206
Number of successful extensions: 1323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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