Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K03
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...   153   4e-38
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...   134   1e-32
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...   111   1e-25
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    30   0.47 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.4  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score =  153 bits (370), Expect = 4e-38
 Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
 Frame = +3

Query: 288 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 467
           +IK+F+G+SHP+LA+K+  R+G+ LGKV   ++SN ET V IGESVR EDV+I+Q+G G 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 468 INDNLMELLIMINACKIASASRVTAVIPWLPVRAARQKRQEQSPDHGQTRCQHPFSVWSR 647
           IND+LMELLIMINAC+ ASA R+TA+IP  P   ARQ ++++S      R        + 
Sbjct: 65  INDHLMELLIMINACRSASARRITAIIPCFPY--ARQDKKDKSRAPITARLVANMLQTAG 122

Query: 648 SHHHYGSSCVANSRIL*YSG*ITSL-PNPAVLKWIKENIPDW-KTSIVVSPXAGGAKRVT 821
            +H       A+     ++  + +L   P+VL++I+ENI      +++VSP AGGAKR T
Sbjct: 123 CNHIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAGGAKRAT 182

Query: 822 SIADXFE 842
           ++AD  +
Sbjct: 183 ALADRLD 189



 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = +1

Query: 556 FPYARQDKKDKSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIP 705
           FPYARQDKKDKSRAPITA+LVAN+L  +G +HIITMDLHASQIQGFF++P
Sbjct: 94  FPYARQDKKDKSRAPITARLVANMLQTAGCNHIITMDLHASQIQGFFNVP 143


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  134 bits (325), Expect = 1e-32
 Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
 Frame = +3

Query: 282 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 461
           M +  +  G SHP+L   I +RLGI    V  K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 462 GEINDNLMELLIMINACKIASASRVTAVIPWLPVRAARQKRQEQSPDHGQTRCQHPFSVW 641
             +ND+LMELLI+I+ACK  SA R+TAV+P+ P   ++Q +  +  D    R        
Sbjct: 61  STVNDSLMELLIIISACKGGSAKRITAVMPYFPY--SKQSKMRKYRDAITARMVANLLTV 118

Query: 642 SRSHHHYGSSCVANSRIL*YSG*ITSL-PNPAVLKWIKENIPDWKTSIVVSPXAGGAKRV 818
           +   H       A+     ++  + +L   P + +WI+ N+ DW+ ++VVS   GGAKRV
Sbjct: 119 AGVDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVSKNPGGAKRV 178

Query: 819 TSIAD 833
           TS+AD
Sbjct: 179 TSLAD 183



 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 32/50 (64%), Positives = 41/50 (82%)
 Frame = +1

Query: 556 FPYARQDKKDKSRAPITAKLVANILSVSGADHIITMDLHASQIQGFFDIP 705
           FPY++Q K  K R  ITA++VAN+L+V+G DHIIT+DLHASQ+QGFF  P
Sbjct: 92  FPYSKQSKMRKYRDAITARMVANLLTVAGVDHIITLDLHASQMQGFFTRP 141


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score =  111 bits (267), Expect = 1e-25
 Identities = 58/105 (55%), Positives = 73/105 (69%)
 Frame = +3

Query: 282 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 461
           M N+ VF   SHP L + I + L +D+G+V   KFSN ET V I +SVRG DVYIV   S
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 462 GEINDNLMELLIMINACKIASASRVTAVIPWLPVRAARQKRQEQS 596
           G++ND+LMELLIMI+ACK ASA +VTAV+P  P   +RQ  Q+ S
Sbjct: 61  GQVNDHLMELLIMISACKTASAKKVTAVLPVFPY--SRQPDQKFS 103



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +1

Query: 613 LVANILSVSGADHIITMDLHASQIQGFFDIP 705
           LVA++L  SGADHIITMDLH  Q QGFFDIP
Sbjct: 135 LVADLLMCSGADHIITMDLHDPQFQGFFDIP 165



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +3

Query: 729 PAVLKWIKENIPDWKTSIVVSPXAGGAKRVTSIAD 833
           P +  +I  NIP++  +++VSP AGGAKR T+IAD
Sbjct: 173 PLLKHYISLNIPNYHNAVIVSPDAGGAKRATAIAD 207


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 605 VIGALLLSFLSCRAYGKPRYDGGHSRC 525
           V G+++ SFLS RA+G  RY GG   C
Sbjct: 493 VTGSIITSFLS-RAFGSIRYSGGRRFC 518


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 558 PVRAARQKRQEQSPDHG--QTRCQHPFSVWSRSHHHYGSSCVANSRIL 695
           P+ + +Q+  +QSP  G  Q   Q P SV   S  HY  + V   ++L
Sbjct: 64  PLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVL 111


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 295 LMFGILVVKGRT*SNLFTTSSRVI 224
           L+FGIL + G   + L+TT +R+I
Sbjct: 319 LIFGILCIAGFVVNELYTTRTRII 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,888
Number of Sequences: 5004
Number of extensions: 64837
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)