Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_K02
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 71 1e-12
10_08_0144 - 15176059-15176112,15176375-15176455,15176711-151767... 55 6e-08
07_03_0093 + 13330867-13332312 42 6e-04
02_04_0590 - 24154366-24155742 29 6.4
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 29 6.4
08_01_0027 - 195321-195932,197206-197415 28 8.4
06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534 28 8.4
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 70.9 bits (166), Expect = 1e-12
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Frame = +1
Query: 301 KGSPSQYVKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRMEVLTDSE-GWILIDRCGKH 471
+ S S V LN+GG + TT+ TLT+ + +ML MFSGR + + G + +DR GKH
Sbjct: 6 ESSSSSPVLLNIGGKRYATTVETLTQREPSSMLAAMFSGRHTLPRHPDTGMVFVDRDGKH 65
Query: 472 XGTILNYLRDGTVALPD-SYKEIMELLAEAKYFLIEELTESCLQALXKKN 618
+LN+LRDG A+PD S E +LL EA+Y+ + L + L KN
Sbjct: 66 FRHVLNWLRDG--AVPDMSESEYQQLLREAEYYQLLGLADCINDRLGWKN 113
>10_08_0144 -
15176059-15176112,15176375-15176455,15176711-15176770,
15177220-15177278,15177412-15177485,15177595-15177641,
15177852-15177935,15178051-15178212,15178264-15178467,
15178541-15178647,15178746-15178773
Length = 319
Score = 55.2 bits (127), Expect = 6e-08
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Frame = +1
Query: 322 VKLNVGGTLFYTTIGTLTKSD--NMLRTMFSGRME--VLTDSEGWILIDRCGKHXGTILN 489
+ LN+GG+ + TT TLT+ D ++L SG + T +G + +DR G+ +LN
Sbjct: 5 ILLNIGGSRYETTADTLTQRDPGSLLAAALSGAAAHGLPTTEDGAVFVDRDGELFRHVLN 64
Query: 490 YLRDGTV-ALPDSYKEIMELLAEAKYFLIEELTESCL 597
+LRDG V AL D+ E +LL EA+Y+ + + E CL
Sbjct: 65 WLRDGAVPALADA--EYRQLLREAEYYRL-PVYEQCL 98
>07_03_0093 + 13330867-13332312
Length = 481
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +1
Query: 313 SQYVKLNVGGTLFYTTIGTLTK--SDNMLRTMFSGRMEVLTDSEGWILIDRCGKHXGTIL 486
S V LNVGG +F TT+ TL++ + + L ++ T + +DR + T+L
Sbjct: 3 SSVVTLNVGGEVFQTTVATLSRAGASSPLASL------APTPASAPHFLDRDPRLFATLL 56
Query: 487 NYLRDGTVA--LPDSYKEIMELLAEAKYFLIE 576
++LR G +A PDS LLAEA++F +E
Sbjct: 57 SFLRRGRLAPTSPDSDPPSPALLAEARHFGVE 88
>02_04_0590 - 24154366-24155742
Length = 458
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +1
Query: 298 LKGSPSQYVKLNVGGTLFYTTIGTLTKS--DNMLRTMFSGRME----VLTDSEGW---IL 450
+KG + V+LNVGG +F T TL + D ML M D EG
Sbjct: 1 MKGKRGR-VRLNVGGRVFETMASTLASAGRDTMLGAMIDASWNHGGGGDGDGEGGADEYF 59
Query: 451 IDRCGKHXGTILNYLRDGTVALPDSYKEIMELLAEAKYF 567
IDR + +L+ LR G + +P + + L EA Y+
Sbjct: 60 IDRDPECFAVLLDLLRTGGLHVPPHVADGV-LCREALYY 97
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +1
Query: 337 GGTLFYTTIGTLTKSDNMLRTMFSGRMEVLTDSEGWILIDRCGKHXGTILNYLRDGTVAL 516
GG + G + +ML S +ME SE +I GT++ + G L
Sbjct: 167 GGEAILVSSGLVLYCGDMLAHTLS-KMEFSVSSEAFIRAPGTRSEIGTVIQGVLLGLFLL 225
Query: 517 PDSYKEIMELLAEAKYFLIE--ELTESCLQ 600
P YK +++LA + + + E C Q
Sbjct: 226 PLLYKSSLQVLAYCRKLESQRTQTVEECTQ 255
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 454 DRCGKHXGTILNYLRDGTVALPDSYKEIMELLAEAKYFLIEELTESCLQAL 606
D C + ++ ++ GT+ L +K + LLA A + I ++ + C ++L
Sbjct: 153 DMCLESCSALIGFIY-GTIKLDQFWKHRLSLLAAANKYSISDIKDCCEESL 202
>06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534
Length = 96
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 310 DCLLTTFCDLPTLFQNEEITSTR*YETTSTPGLSTIFLFQMYLYYI 173
DC L FCD +L Q R + P LS + F YL+++
Sbjct: 8 DCCLQLFCDRCSLSQMYRELKNRGVNPANGPVLSKLSHFYWYLWFL 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,145
Number of Sequences: 37544
Number of extensions: 343394
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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