Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_K01
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.00 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 37/150 (24%), Positives = 39/150 (26%), Gaps = 4/150 (2%)
 Frame = +3

Query: 537 PPVXLPPXDPXX---PLXPXXXSXPXPXXXPXGGPXPXXXXXXXXXXXXXXPPPXXPPXX 707
           PP   PP        PL P   S P P   P   P                 PP  PP  
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP-PRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395

Query: 708 XAXXXXPXXXXPXGPPXXPXXXPXXXXXXPXRXXXPXSRXLXGXPGXXXAXXLXAXPAXX 887
                 P    P  PP             P     P S      P    +  + A  A  
Sbjct: 396 ------PGRSAPALPPLGNASRTSTPPV-PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 888 XXXGXGX-PXXAXXRPXXPPXXPAXPAPPP 974
                   P      P  PP  PA PAPPP
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/76 (23%), Positives = 19/76 (25%)
 Frame = +3

Query: 537 PPVXLPPXDPXXPLXPXXXSXPXPXXXPXGGPXPXXXXXXXXXXXXXXPPPXXPPXXXAX 716
           P V   P  P  P+ P   S P P   P     P              P    PP     
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVV 673

Query: 717 XXXPXXXXPXGPPXXP 764
              P    P   P  P
Sbjct: 674 PEVPSVPQPPAVPVVP 689


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
 Frame = +3

Query: 552 PPXDPXXPLXPXXXSXPXPXXXPX---GGPXPXXXXXXXXXXXXXXPPPXXPPXXXAXXX 722
           PP  P   + P     P P   P    GGP P              PPP  PP   A   
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP-PPAVSAGGS 790

Query: 723 XPXXXXPXGPP 755
                 P   P
Sbjct: 791 RYYAPAPQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,681,551
Number of Sequences: 5004
Number of extensions: 20079
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)