Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_J20
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 140 2e-34
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 140 2e-34
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 140 2e-34
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 49 1e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 29 1.2
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 4.7
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 8.3
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 26 8.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 8.3
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 140 bits (339), Expect = 2e-34
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +2
Query: 200 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 379
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 380 VTAMDVVYALKRQG 421
VT++DVVY+LKRQG
Sbjct: 82 VTSLDVVYSLKRQG 95
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 140 bits (339), Expect = 2e-34
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +2
Query: 200 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 379
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 380 VTAMDVVYALKRQG 421
VT++DVVY+LKRQG
Sbjct: 82 VTSLDVVYSLKRQG 95
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 140 bits (339), Expect = 2e-34
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +2
Query: 200 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 379
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 380 VTAMDVVYALKRQG 421
VT++DVVY+LKRQG
Sbjct: 82 VTSLDVVYSLKRQG 95
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 239 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 418
IR+LA K+I+G + EE ++F + + D + +HA RKT+ DVV +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 361 TRQEEDRHRYGCCVRSETPRSHPVTVSAVKEVSSTIFYFYFLSRERFNFFFSCTDNRA 534
T ++E+ R ET P++ KE++ T++Y+YF + N+ ++A
Sbjct: 27 TEEQEEEFRSAVATVRETLLGVPISE---KEIADTVWYYYFDVEKSVNYLLQKASSKA 81
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 259 RWSETYLRSYIRRDPRRSQSVPRKRDPR 342
+++ +R++IR D RS+ +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 223 HHETGYPSFGSQRWSETYLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEEDRHRYGCCV 402
HHE FG+ ET + I+++ + S+ +P + R R+ C V
Sbjct: 585 HHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTV 644
Query: 403 RSETPRSH-PVTVSAVKEV 456
R E+P + T+ VK V
Sbjct: 645 RVESPVNELNSTMEEVKNV 663
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 563 SKQASKQASNTRRGPSRNMFQELFAVVDVVNQSQVTFGSFNY 688
+K A SN + P R +++ L A ++ N SQV NY
Sbjct: 144 AKVAEIYHSNNQSNPHRWVYEFLLATLEFQNVSQVANSIHNY 185
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 287 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 421
I +ET VL E+ I D+ T T+ KRK V ++Y R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,295
Number of Sequences: 5004
Number of extensions: 46313
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -