Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J19
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.70 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 17/61 (27%), Positives = 19/61 (31%)
 Frame = +1

Query: 676  PP*XXSXXXPPXXXGGXPPPGXXXXPPVXPLXXPPGAPPXXXXXPXXRXXGPALXPXRGX 855
            PP       PP      PPP     PP       P  PP     P      P++ P  G 
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSV-PNPGD 1748

Query: 856  R 858
            R
Sbjct: 1749 R 1749


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -2

Query: 842 GXRAGPXXRXXGXXXXXGGAPGGXXRGXTGGXXXXPGG-GXPPXX*GG 702
           G   GP     G     GG PGG   G  GG    PGG G  P   GG
Sbjct: 225 GFGGGPGG-FEGGPGGFGGGPGGFG-GGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 730 PPGXXXXPPVXPLXXPPGAPP 792
           PPG    PP  P   PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,037
Number of Sequences: 5004
Number of extensions: 20844
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)