Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J18
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = +2

Query: 740 PXPPPXGXXPXXXXLXPXAPPPQHXXXEKXXPPXXGXXGPPPGXXXLXXXPPPXNXP 910
           P PPP    P         PPP         PP      PPPG       PPP   P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP------PPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = +2

Query: 794 APPPQHXXXEKXXPPXXGXXGPPPGXXXLXXXPPPXNXPPGXXXLXXXXXXEKXTPPPLX 973
           +PPP         P       PPP    +   PPP   PPG   +          PPP  
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAP--IMGGPPPPPPPPG---VAGAGPPPPPPPPPAV 785

Query: 974 XAGG 985
            AGG
Sbjct: 786 SAGG 789



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 739 AXXPPXGXPPXXKXSXPXXPPPPTXXXGKXXPP 837
           A  P    PP      P  PPPP    G   PP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +2

Query: 749 PPXGXXPXXXXLXPXAPPPQHXXXEKXXPPXXGXXGPPPGXXXLXXXPPPXNXP 910
           PP G       L P  PPP+         P  G   PPP        PPP + P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP--------PPPRSAP 370


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 24/88 (27%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
 Frame = +1

Query: 661  PPXXGGGXPPPXKKXXVXXGGXLXXGAXXPPX----GXPPXXKXSXPXXP------PPPT 810
            PP       PP  K  V            PP     G PP  K S    P       PP 
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142

Query: 811  XXXGKXXPPXFXXXGAPPRXXXPXXGPP 894
                   PP     GAPP        PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.149    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,570
Number of Sequences: 5004
Number of extensions: 27620
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)