Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_J15
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.49
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.49
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 2.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 781 FXPXGXGGXFFXXPPGXXXPPXGGXPXPPRXXFXSPPPLFHP 906
F P G GG PPG P GG P PP + S P +P
Sbjct: 325 FGPPGMGGMPPPPPPGMRYP--GGMPPPPPPRYPSAGPGMYP 364
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 781 FXPXGXGGXFFXXPPGXXXPPXGGXPXPPRXXFXSPPPLFHP 906
F P G GG PPG P GG P PP + S P +P
Sbjct: 335 FGPPGMGGMPPPPPPGMRYP--GGMPPPPPPRYPSAGPGMYP 374
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 820 PPGXXXPPXGGXPXPPRXXFXSPPPLF 900
P PP G P PPR F PPP F
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHF 311
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 820 PPGXXXPPXGGXPXPPRXXFXSPPPLF 900
P PP G P PPR F PPP F
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHF 311
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 787 PXGXGGXFFXXPPGXXXPPXGGXPXPPRXXFXSPPP 894
P GG PPG P GG P PP PPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 787 PXGXGGXFFXXPPGXXXPPXGGXPXPPRXXFXSPPP 894
P GG PPG P GG P PP PPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 787 PXGXGGXFFXXPPGXXXPPXGGXPXPPRXXFXSPPP 894
P GG PPG P GG P PP PPP
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -2
Query: 896 RGGGXKKXXRGGXGXP-PXGGXXXPGGXXKXXPPXPXGXKG 777
+GG + G G P P G PGG PP P G G
Sbjct: 249 QGGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSG 289
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPP 894
PP GG P PPR PPP
Sbjct: 283 PPAGGSPPPPRAGSPPPPP 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPPLFHP 906
PP G P PPR PPP P
Sbjct: 258 PPAAGSPPPPRTGSPPPPPTGSP 280
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPP 894
PP GG P PPR PPP
Sbjct: 304 PPAGGSPPPPRAGSPPPPP 322
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPPLFHP 906
PP G P PPR PPP P
Sbjct: 279 PPAAGSPPPPRTGSPPPPPTGSP 301
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPP 894
PP GG P PPR PPP
Sbjct: 289 PPAGGSPPPPRAGSPPPPP 307
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 838 PPXGGXPXPPRXXFXSPPPLFHP 906
PP G P PPR PPP P
Sbjct: 264 PPAAGSPPPPRTGSPPPPPTGSP 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,873,437
Number of Sequences: 27780
Number of extensions: 128024
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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