Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J14
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    30   2.1  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.8  
03_05_0576 + 25765137-25766420                                         28   8.6  

>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 310 SANARGEADCVXGALPLPRSLTRCXRSFGCGERYQLTQRR*YGYPQNQVITXERTCEQNA 489
           ++++R     + G   LP+ L RC    G   R+  T+     Y  N  +     C +N+
Sbjct: 382 ASSSRFVTPFILGCKLLPKHLQRCFGVLGTYPRWTFTREELISYWMNNCVVVSENCMKNS 441

Query: 490 SKMPAT 507
            +  AT
Sbjct: 442 IENVAT 447


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +1

Query: 523 CWRFSIGSXPLTSITKIDAQVRXXETRQDYXDTRRFPLEAPSCALLFRPCRLPXXXS 693
           CWR  +        T  D Q    +    + D    P + PSC L+F P   P   S
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYS 339


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -3

Query: 407 RSPQPXDRXQRVSERGSGRAPXTQSASPRALADSLMQXKPPTPPXXP 267
           R  +P     R  +RG   AP + S SP           PP PP  P
Sbjct: 48  RLKKPSASASRRKKRGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSPP 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,282
Number of Sequences: 37544
Number of extensions: 301981
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)