Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J13
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   2.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 521 VTQFEATDARRCFPCWDEPAIKATFDITLQ 610
           + +  A    + + C DEP +  TF+IT++
Sbjct: 212 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 241


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 521 VTQFEATDARRCFPCWDEPAIKATFDITLQ 610
           + +  A    + + C DEP +  TF+IT++
Sbjct: 212 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 521 VTQFEATDARRCFPCWDEPAIKATFDITLQ 610
           + +  A    + + C DEP +  TF+IT++
Sbjct: 208 ILEVPAVRNEKFYTCCDEPYLDITFNITMR 237


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 548 RRCFPCWDEPAIKATFDITLQ 610
           ++ +PC DEP     F+ITL+
Sbjct: 212 KKYYPCCDEPYPDIFFNITLR 232


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 521 VTQFEATDARRCFPCWDEPAIKATFDITLQ 610
           + +  A+     +PC  EP    TF+IT++
Sbjct: 217 ILEVPASRNEEYYPCCTEPYSDITFNITMR 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,878
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)