Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J12
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    66   3e-11
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    29   4.3  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    29   4.3  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    29   4.3  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/61 (47%), Positives = 37/61 (60%)
 Frame = +1

Query: 67  RKYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHK 246
           +++N  VHGPY   RYYGK DT F  +KL ++ +W  RR KTPSA    F R  WR  + 
Sbjct: 51  KRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWRVHNL 110

Query: 247 Y 249
           Y
Sbjct: 111 Y 111


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 225 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILPWG 61
           G   +S   +  +A   EPR   VQL   +  + F+IV G    P+Y   +LP G
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGG 542


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 225 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILPWG 61
           G   +S   +  +A   EPR   VQL   +  + F+IV G    P+Y   +LP G
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGG 542


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 225 GSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMYSRIILPWG 61
           G   +S   +  +A   EPR   VQL   +  + F+IV G    P+Y   +LP G
Sbjct: 490 GPLNTSYSSQAPIAIPLEPRP--VQLVKGQNGLGFNIVGGEDNEPIYISFVLPGG 542


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 115 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 288
           +  PD P  Q K+N+I   +   S  PS+ +G+ + +   ++  Y +P + G  P  Q
Sbjct: 34  FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 115 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 288
           +  PD P  Q K+N+I   +   S  PS+ +G+ + +   ++  Y +P + G  P  Q
Sbjct: 34  FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,629
Number of Sequences: 27780
Number of extensions: 224653
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)