Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J11
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   177   1e-45
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    29   0.66 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   8.1  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   8.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   8.1  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  177 bits (432), Expect = 1e-45
 Identities = 83/132 (62%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
 Frame = +2

Query: 221 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 400
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 401 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 577
             + QVI  STDSE+SHLA+INTPRK+GGLG + IPLLAD   ++S+DY VL++D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 578 RGLFIIDRNGTL 613
           RGLF+ID  G L
Sbjct: 124 RGLFLIDPKGVL 135



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 615 RHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQK 794
           R +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+    +DTI  + K+ ++YF K
Sbjct: 136 RQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI--DTKNPEKYFSK 191


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 284 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 460
           ++L D T  K +V+F YP   T  C  +   F D        D +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 191 FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 364
           F+ +S+T     Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 518 DYKKQISKDYDVLLDDGFALRGLFIIDRNGTLXSHVG 628
           DY   IS D   LLD  +  +G +  DRN  L  H+G
Sbjct: 32  DYDVNISSDNPRLLDS-YRPKGNYGRDRNSPLSRHIG 67


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
 Frame = +2

Query: 38  KIFEVYLIELICLGFKYNPKSLL---THAKMSFIVKQLSRSVLSP------AFKVAKRIN 190
           K FE YL+EL+C    ++ +SL+    H + S       RS+L P        KVA   N
Sbjct: 88  KCFE-YLMELLCPSLPHDTRSLVKLCKHVESSLASGSDVRSLLIPGSIDQSVLKVAATNN 146

Query: 191 FSTTSTTRAPKVQKPA 238
              +S  ++  V  P+
Sbjct: 147 KDDSSAVKSANVSFPS 162


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 170 KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 349
           KV +R N    +T   P++        A ++++   N++  +DF GK+ +++F       
Sbjct: 79  KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132

Query: 350 VCPTEL 367
           +CP EL
Sbjct: 133 ICPDEL 138


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 726  WNPDTNADTIKPNPKDS 776
            WNP+   D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,149
Number of Sequences: 5004
Number of extensions: 68454
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)