Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_J09
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 89 1e-18
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 81 2e-16
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 81 2e-16
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 78 2e-15
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 76 6e-15
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 71 2e-13
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 71 3e-13
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 71 3e-13
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 70 5e-13
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 69 9e-13
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 66 6e-12
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 57 3e-09
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 57 4e-09
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 54 3e-08
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 53 5e-08
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 53 6e-08
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 46 5e-06
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 46 1e-05
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 45 1e-05
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 44 2e-05
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 42 1e-04
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 41 2e-04
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 29 0.89
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 4.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 26 8.3
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 8.3
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 88.6 bits (210), Expect = 1e-18
Identities = 50/134 (37%), Positives = 69/134 (51%)
Frame = +3
Query: 234 YQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRELY 413
Y++L V +A+ E+KKAYRKLA HPDKN P+A KF+++ AYE L+D EKR Y
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKN---PNAGDKFKEISRAYEILADEEKRATY 64
Query: 414 DRCGEDCLKKDGMMNNNDPXXXXXXXXXXXXXXEPQHHETPRGADIVMELTVSLEELYNG 593
DR GE+ L+ G +G D+V + V+LE+LY G
Sbjct: 65 DRFGEEGLQGGGADGGMSADDLFASFFGGGMFGGGMPRGPRKGKDLVHTIKVTLEDLYRG 124
Query: 594 NFIEITRNKPVIKP 635
++ K VI P
Sbjct: 125 KTTKLALQKKVICP 138
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 81.4 bits (192), Expect = 2e-16
Identities = 37/69 (53%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Frame = +3
Query: 225 RDFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAA-QKFQDLGAAYEALSDPEK 401
RD+Y IL +S A+ + IKK+YR+LA HPDKN+++P+AA +KFQ L AY+ LSDP+
Sbjct: 8 RDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVLSDPKL 67
Query: 402 RELYDRCGE 428
RE YD+ G+
Sbjct: 68 REKYDKLGK 76
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +3
Query: 237 QILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRELYD 416
QILGVS+ A+ +EI+KAYR+L K HPDKN + +A +KF ++ A+E LSDPE+R++YD
Sbjct: 10 QILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYD 69
Query: 417 RCGEDCL 437
GE+ L
Sbjct: 70 AYGEEGL 76
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 77.8 bits (183), Expect = 2e-15
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 198 QL*SSPSAGRDFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAY 377
QL S +D Y+ILGVS+ A EIKKAYRKLA HPDKN + +A +F+++G AY
Sbjct: 339 QLELKKSKRKDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAY 398
Query: 378 EALSDPEKRELYD 416
LSDPE R +D
Sbjct: 399 TILSDPESRRRFD 411
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 76.2 bits (179), Expect = 6e-15
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPD-AAQKFQDLGAAYEALSDPEKR 404
++Y +LG+S A +IKKAYRKLA HPDKN DDP A++KFQ + AY+ L D + R
Sbjct: 8 EYYDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLR 67
Query: 405 ELYDRCGED 431
YD+ G++
Sbjct: 68 SQYDQFGKE 76
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAA--QKFQDLGAAYEALSDPEK 401
+ Y LG+ + A +++IK++Y +L++ HPD++ D AA +KFQ + AYE LSDP K
Sbjct: 8 ELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVLSDPSK 67
Query: 402 RELYDRCGEDCLKKD 446
+E+YD GE LK D
Sbjct: 68 KEIYDNFGEQGLKTD 82
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 70.5 bits (165), Expect = 3e-13
Identities = 35/71 (49%), Positives = 45/71 (63%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRE 407
D Y+ LGVS+SA+ +EIK AY KLAK HPD N D A KF ++ AYE L DP+K++
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKA-AQDKFVEIKQAYEVLQDPKKKK 144
Query: 408 LYDRCGEDCLK 440
+D G K
Sbjct: 145 AFDTYGAGAFK 155
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 70.5 bits (165), Expect = 3e-13
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Frame = +3
Query: 234 YQILGVSRSANTNEIKKAYRKLAKALHPDKN--QDDPDAAQKFQDLGAAYEALSDPEKRE 407
Y IL V A+ EIKK+Y++LA HPDK + +AA++F+ + AY+ L DPE RE
Sbjct: 8 YDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDPESRE 67
Query: 408 LYDRCG---EDCLKKDGMMNNND--PXXXXXXXXXXXXXXEPQHHETPRGADIVMELTVS 572
+YD G + + DG +N +D RG+D++ + +S
Sbjct: 68 MYDMYGMNSDSNSQFDGGVNLDDVLAQMFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEIS 127
Query: 573 LEELYNGNFIEITRNKPVIKP 635
LE+++ G +++ + + P
Sbjct: 128 LEDMFKGKEVKLRATRNTLCP 148
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 5e-13
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +3
Query: 219 AGRDFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPE 398
A Y L V A+ E+KKAYRKLA HPDKN P+ +KF+++ AYE LSDP+
Sbjct: 3 ADTKLYDCLEVRPEASEAELKKAYRKLALKYHPDKN---PNGEKKFKEISLAYEVLSDPQ 59
Query: 399 KRELYDRCG 425
+R+LYD+ G
Sbjct: 60 RRKLYDQYG 68
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 68.9 bits (161), Expect = 9e-13
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRE 407
D+Y++LG++ A EI +A+RK + HPDKN +DP AA+KF L AY AL D + R+
Sbjct: 9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRK 68
Query: 408 LYD 416
YD
Sbjct: 69 AYD 71
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 66.1 bits (154), Expect = 6e-12
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +3
Query: 231 FYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKREL 410
+Y+IL + ++ EIKK+Y+KLA LHPDKN P A + F+ + A++ LSDP R
Sbjct: 114 YYEILDLKKTCTDTEIKKSYKKLALQLHPDKNH-APSADEAFKMVSKAFQVLSDPNLRAH 172
Query: 411 YDRCGED 431
YDR G D
Sbjct: 173 YDRTGMD 179
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 57.2 bits (132), Expect = 3e-09
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 207 SSPSAGRDFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEAL 386
++P D Y+IL V+ ++ EIK YRKLA HPD+N D + F + AAY L
Sbjct: 2 NNPFKDMDCYEILQVNHDSDLQEIKANYRKLALQYHPDRNPGIEDYNEIFSQINAAYNIL 61
Query: 387 SDPEKRELYDR 419
S+ +KR+ +++
Sbjct: 62 SNDDKRKWHEK 72
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 56.8 bits (131), Expect = 4e-09
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPD-AAQKFQDLGAAYEALSDPEKR 404
D+Y IL + ++A +I+K Y LA HPD+N D + A ++FQ L A+E LSD KR
Sbjct: 12 DYYAILKLQKNATFQQIRKQYLFLALQYHPDRNPGDEERAVKRFQRLQLAHEVLSDATKR 71
Query: 405 ELYDR 419
+YD+
Sbjct: 72 LIYDQ 76
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDP---DAAQKFQDLGAAYEALSDPE 398
D Y +LGV + A+ I++AYRK A HPD+ D+ +A +F + AY LSD +
Sbjct: 31 DPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSDKK 90
Query: 399 KRELYDRCGE 428
+R+ YD+ G+
Sbjct: 91 RRKHYDKTGQ 100
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 53.2 bits (122), Expect = 5e-08
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQD-DPDAAQKFQDLGAAYEALSDPEKR 404
D+Y ILG +++ EI++ Y KL HPD+N + + +FQ + A+E L DP+ R
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPGREAEVLPQFQLIQKAHEVLKDPKLR 71
Query: 405 ELYDR 419
EL+D+
Sbjct: 72 ELFDQ 76
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 225 RDFYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDD--PDAAQKFQDLGAAYEALSDPE 398
+D+Y IL ++ A+ EIK AY+K A HPD+ A ++FQ + AY LSD
Sbjct: 3 KDYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNS 62
Query: 399 KRELYDR 419
+R YDR
Sbjct: 63 RRAQYDR 69
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 234 YQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRELY 413
Y +L + + ++I+ YRK + +HPDKN+D+P AA F L A L + + RE
Sbjct: 33 YDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRESL 92
Query: 414 D 416
D
Sbjct: 93 D 93
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 225 RDFYQILGVSR---SANTNEIKKAYRKLAKALHPDKNQDDPDAAQK--FQDLGAAYEALS 389
+D Y +LG+S+ A+T +IKKA+ K HPDK + F+ + AYE LS
Sbjct: 96 QDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILS 155
Query: 390 DPEKRELYDRCGED 431
DP +R +D E+
Sbjct: 156 DPVRRRQFDSVDEN 169
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +3
Query: 231 FYQILGVSRSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKREL 410
FY++L V A+ EI +AYRK + HPDKN P + + + LG L + E R+
Sbjct: 41 FYELLEVPTKASIKEINRAYRKKSILYHPDKN---PKSKELYTLLGLIVNILRNTETRKR 97
Query: 411 YD 416
YD
Sbjct: 98 YD 99
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Frame = +3
Query: 228 DFYQILGVSRSANTNEIKKAYRKLAKALHPDK-----NQDDPDAAQKFQDLGAAYEALSD 392
D Y+ILG+++ + +++++ Y++L+ HPDK N + + + ++ AY AL+D
Sbjct: 98 DPYEILGIAKGTSVDDVRRHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITNAYRALTD 157
Query: 393 PEKRELY 413
+ RE Y
Sbjct: 158 DKTRENY 164
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 234 YQILGVS--RSANTNEIKKAYRKLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRE 407
Y +L + ++ +EIK+AYRK HPDK ++ P + AY+ LS + R+
Sbjct: 4 YSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKDRQ 63
Query: 408 LY 413
Y
Sbjct: 64 QY 65
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Frame = +3
Query: 234 YQILGVSRSANTNEIKKAYRKLAKALHPDKNQ--------DDPDAAQK-----FQDLGAA 374
Y+IL + R+ N+IK+ Y +L K HPDK + + P K F+ L AA
Sbjct: 34 YEILELPRTCTANDIKRKYIELVKKHHPDKMKNASQLAPTESPPEINKHNEEYFRLLLAA 93
Query: 375 YEALSDPEKRELYDRCG 425
LSD +RE YDR G
Sbjct: 94 NALLSDKRRREEYDRFG 110
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 29.1 bits (62), Expect = 0.89
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 294 KLAKALHPDKNQDDPDAAQKFQDLGAAYEALSDPEKRELYDRCGEDCLKKDG 449
KL L P ++D P ++ ++ + S E L+DR G+ LK DG
Sbjct: 81 KLPSFLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDG 132
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 393 GLIMPHKPPLNLETFEQHRDHLDFYQDAMLLLIFCKP 283
GL++ PL +E + + DH Q A L+ F P
Sbjct: 683 GLLLTGLTPLGMELLQNYIDHTSDVQTAALIAAFVVP 719
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 414 RTVRVFRGLIMPHKPPLNLETFEQHRDHLDFY 319
RT +I+ HK +N ++ +D +DFY
Sbjct: 173 RTFLYLEQIILKHKAHMNTVNIKETKDGIDFY 204
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 552 VMELTVSLEELYNGNFIEITRNKPVIK 632
+++L + E+ + GNF+ +T N+ V+K
Sbjct: 672 LLQLQQTYEDQFTGNFVGLTVNEVVVK 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,336
Number of Sequences: 5004
Number of extensions: 54457
Number of successful extensions: 181
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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