Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J09
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    27   0.31 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 540 GADIVMELTVSLEELYNGNFIEITRNKPVIKPAPGTASVXVDKKWY 677
           G++     T  ++ +YN +  E+ R K ++K A  T      ++WY
Sbjct: 68  GSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWY 113


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 492 NHQRSLQKGHYCSSFHLSSNSLRRNDRT 409
           N ++S  +   C  + +SSNSLR   R+
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRS 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,702
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)