Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J06
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   1.9  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    29   5.7  

>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 680 APXXALSCSDPARLPDTCPPFSXSGSVAP-FSIAHAVXYLQFGCRSFAPSWAVSXNPPFS 856
           AP  A +   PA  P    P    G  AP F+ A  V        ++AP+  V+  P F+
Sbjct: 50  APAYAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPAYAPAPVVAAAPAFA 109

Query: 857 PTXAP 871
           P  AP
Sbjct: 110 PAYAP 114


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 830 PSLERTTYTRTGDNXQRELWRKAPRFPXGRKADRYPVSGQGRNRRAXRXELXRGKR 663
           P  +R +  R G        R++P    G  A+  P+ G  R RRA R     G+R
Sbjct: 231 PPRDRMSPMRRGGRSPPPHRRRSPMGGRGSGANNMPLGGPNRFRRASRSRSPAGRR 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,275
Number of Sequences: 27780
Number of extensions: 342921
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)