Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J05
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   1.2  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    28   2.1  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   3.6  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 252 RDYQATNMICPDGLHFNPSVEWPAYPCGYPVEVTCVG 362
           + ++ +  +C     + P+   PA P GY +++ C+G
Sbjct: 364 KKFKISVRVCSQRYPYPPNATKPATPLGYMLDICCIG 400


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = +2

Query: 584 GFTCPPAPLDAIGNPLNNVINYKYEGNCYYFFSCEQNRARLLSCDIGSC 730
           G T PP P +++ N +N     +     Y++ S      +++   +  C
Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYISRGLIPCKMIGALVSGC 388


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 522 PDFSRCDWADLVPSCDAEXSWVSLAPLLLW 611
           P F++   A ++ +CD E S++S   +L+W
Sbjct: 113 PYFAKGSVAQVIRNCDIEGSYISEKRILVW 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,876
Number of Sequences: 5004
Number of extensions: 75607
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)