Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J05
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.71 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 122 PRLASGCKPCPINTRCCYCPERNL 193
           P +   CK C   T+CC+  +  L
Sbjct: 431 PPIGCECKTCNSKTKCCFAQDDGL 454


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 462 RTCVGGRAFDMVCPPGL---AFNP 524
           +TC+ GRAF ++   G    AFNP
Sbjct: 299 KTCISGRAFQVLTWLGYSNSAFNP 322


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 503 RAYHVESTTTYACSVLATIGGRSVR--MFEDAILVRAIRCCLGRLD--APSSYTCH 348
           R   VE +  Y C V  ++GG SV   +   A L   I      +D   P+++TC+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 500 PAGTSIQSRLQPL*LGRPCTF 562
           P G  I+   Q +  GRP TF
Sbjct: 307 PLGAEIEPSTQTIDFGRPATF 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,944
Number of Sequences: 438
Number of extensions: 5498
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)