Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J04
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   8.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 481 DWEKWKFLCLLITKNRFQKIMMYYSMMGLH 570
           DW  WKF  L+   + F  +  +  ++ LH
Sbjct: 861 DWRHWKFPNLVEVLDEFPSVRPFAPLLLLH 890


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 352  RQSS*RSVIKLKTLLESIVR*LECPQTLSSVTSHGSTLLGRTV 480
            +QS  + V+  KTLL S ++ +   Q  S +T HG  L G+T+
Sbjct: 1007 QQSPQQHVLPGKTLLASQIKLVSPGQIKSLLTGHG--LQGQTI 1047


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 321 FYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGV 422
           F   D    CP     ++D+  +   +DC  +GV
Sbjct: 752 FDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGV 785



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 342 FVCPTELIAFS-DKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKD-GGLGKMEIPLLAD 515
           F+C  E   F+     DF   DC++   +    ++   W NT   D  GLG  EIP    
Sbjct: 735 FLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW-NTNAVDCSGLGVEEIP---- 789

Query: 516 YKKQISKDYDVLLDDGFALRGL 581
             ++I  D   +  DG  LR L
Sbjct: 790 --RRIPMDATEVYLDGNVLREL 809


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 418 ECPQTLSSVTSHGSTL 465
           +CPQT S ++S  STL
Sbjct: 691 QCPQTASLLSSTHSTL 706


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 208 ELLKFRSLLQTSVRQQLSMESSINLNF 288
           EL K R LLQ ++  QL       LNF
Sbjct: 58  ELQKLRLLLQGNINNQLFQTPCELLNF 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,648
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)