Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_J02
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 33 0.041
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 30 0.38
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 29 1.2
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 2.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 4.7
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 27 4.7
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 8.2
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 26 8.2
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 33.5 bits (73), Expect = 0.041
Identities = 19/100 (19%), Positives = 42/100 (42%)
Frame = +1
Query: 322 IDCTEDQKRAKNIEKSPILCKKTRISKSPILTQKNDDNSPILTTRSILNSPILLPKLSPK 501
++ K + E+S LC K + S+ + ++ NDD+ IL +++N I +P
Sbjct: 163 LNLAPSDKEISSTEESEQLCYKEQESEKELYSKDNDDSLDILNVPNLVNDDIANNNAAPP 222
Query: 502 STMKVKKKLFSIDPKQIIKINEKTKXPXXXXCNNIIQIKI 621
+ ++ S + + I++ T N + +
Sbjct: 223 PPLAQAQEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSV 262
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 30.3 bits (65), Expect = 0.38
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 361 EKSPILCKKTRISKSPILTQKNDDNSPILTTRSILNSPILLPKLSPKSTMKVKKKLFSID 540
E +P L +++R SP NSP+ T ++PILLP+ ST+ V KK F+ D
Sbjct: 411 EVAPPLPQRSRTISSP--------NSPLSATVLPSSTPILLPR-GRSSTLSVNKKQFNAD 461
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/75 (20%), Positives = 40/75 (53%)
Frame = +1
Query: 340 QKRAKNIEKSPILCKKTRISKSPILTQKNDDNSPILTTRSILNSPILLPKLSPKSTMKVK 519
+KR+ + ++ +L K+ R+ ++ I + + S + + ++S +++ K K
Sbjct: 77 RKRSNLVHQTLLLEKEVRVRRNAINQRDDSFLSGFIKSLLEIDSSVVIYNTENPDNPKTK 136
Query: 520 KKLFSIDPKQIIKIN 564
+ + S +PK+ +K+N
Sbjct: 137 QVMPSAEPKKHVKLN 151
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 481 LPKLSPKSTMKVKKKLFSIDPKQIIKINEKT 573
LP L P+ ++V K F DP + ++IN ++
Sbjct: 374 LPILLPRMVLRVLKGKFEADPYEALRINTRS 404
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 322 IDCTEDQKRAKNIEKSPILCKKTRISKSPILTQKNDDNSPILTTRSILNSPILLPKLSPK 501
+D +Q +A N K++ +S ++ KN+ + ++ NSP+ K +
Sbjct: 59 VDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEE 118
Query: 502 STMK--VKKKLFSIDPKQIIKINEK 570
+K + K ++S+ ++ KI EK
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEK 143
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 449 VKIGELSSFFCVKMGLLLILVFLHKIGDFSIFFALFW-SSVQSIIV 315
++ E + F K+ + ++ HK+ F +F +LFW + + S I+
Sbjct: 175 IEFYEATLAFASKLHGMRWFMYTHKVSAFLVFTSLFWFTGITSTII 220
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 370 VISQYFSLFFGLLYSQLS*YLNWK 299
++ QYF+ FF L Y+ S +L+W+
Sbjct: 18 LLHQYFTQFFVLRYASPSMHLDWR 41
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 269 ENLRKNLLITFPI*ILR*LTVQKTKKERKILRNH 370
ENL+KN +T PI + R ++K +E + L+NH
Sbjct: 726 ENLQKNPSVTIPIVLER---LKKKDREWRSLQNH 756
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 34 AFLKTFGFWIRDNIKTIAVK*TLNMKTQKENVFLDKFRLLNSQECSEEIT 183
AF+ T G + D IK IA + ++ EN+ + R NS++ E IT
Sbjct: 151 AFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVS--RAYNSEQQMEYIT 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,746
Number of Sequences: 5004
Number of extensions: 52352
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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