Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_J01
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0002 - 73522-74064                                               31   1.7  
12_02_0299 - 17051570-17052474,17053542-17053755                       30   3.0  
06_01_0145 + 1092764-1093351                                           29   4.0  
06_02_0175 - 12624608-12625297                                         29   5.2  
04_03_0904 + 20717005-20718087                                         29   5.2  
09_01_0002 - 81412-81944,82191-82539                                   28   9.2  

>04_01_0002 - 73522-74064
          Length = 180

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 339 RGEVWEVFSALMNRPPRGERRFAYW 413
           RGE WE +  +   PPRGER   Y+
Sbjct: 47  RGERWEYYMTVKINPPRGERDMYYF 71


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 772 PPSGKRXPFPIXXXXXVSPXXXXGPSXPXPGLVXPKPP-XFXPXPXXPF 915
           PP     PFP+     ++P     PS P P    P PP  + P P  PF
Sbjct: 234 PPPPPFLPFPLPPIPFLTP-----PSPPPPAFPFPLPPWPWAPPPAFPF 277



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +1

Query: 763 PXFPPSGKRXPFP-IXXXXXVSPXXXXGPSXPXPGLVXPKPPXFXPXPXXP 912
           P  PP     PFP +       P     PS P P    P PP   P P  P
Sbjct: 290 PPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPP 340


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = -1

Query: 914 KGXXGXGXNXGGLGXTSPGXGXXGPXXXXGETXXXXXMGKGXRFPEGGKXGQ 759
           KG  G     GG+G      G  GP    G        G G R  +GG+ G+
Sbjct: 98  KGGAGGNAGPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVGGRGRKGGRGGR 149


>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = -1

Query: 911 GXXGXGXNXGGLGXTSPGXGXXGPXXXXGETXXXXXMGKGXRFPEGGKXG 762
           G  G G   GG G    G G  G     G        G G R  +GGK G
Sbjct: 97  GSSGGGGGGGGGGGGGGGGGGGGGGGGGGGRRCWWGCGNGRRRHKGGKEG 146


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = +1

Query: 763 PXFPPSGKRXPFPIXXXXXVSPXXXXGPSXPXPGLVXPKPPXFXPXPXXPFFR 921
           P  PP+ K  P P        P     PS P      P PP + P P  P+ +
Sbjct: 296 PNPPPTYKPQPKPTPTPTPYKPQPKPTPS-PYTPKPTPTPPTYTPTPTPPYHK 347


>09_01_0002 - 81412-81944,82191-82539
          Length = 293

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 339 RGEVWEVFSALMNRPPRGERRFAYW 413
           RGE WE    +   PPRGER   Y+
Sbjct: 47  RGERWEYDMTVKINPPRGERDMYYF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,627
Number of Sequences: 37544
Number of extensions: 237263
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)