Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I24
         (1054 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +1

Query: 658 PPPPAXXIXPAPPPXPRXPXPXPXPXRPPPPXXPXXXEPXP 780
           PP P     P   P    P   P P RPP P      E  P
Sbjct: 111 PPHPRLRREPEAEPGNNRPVYIPQP-RPPHPRLRREPEAEP 150



 Score = 23.0 bits (47), Expect = 4.6
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 658 PPPPAXXIXPAPPPXPRXPXPXPXPXRPPPP 750
           PP P     P   P    P   P P RPP P
Sbjct: 137 PPHPRLRREPEAEPGNNRPVYIPQP-RPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 998  TPPPPXPXPXPP 1033
            TPP P P P PP
Sbjct: 337  TPPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +1

Query: 661 PPPAXXIXPAPPPXPRXPXPXPXPXRPPPPXXPXXXEP 774
           P P+    P  P     P P   P    PP  P    P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 621  AXXXPXXGAGXPPPPP 668
            A   P  G+  PPPPP
Sbjct: 1848 ARNIPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.144    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,585
Number of Sequences: 438
Number of extensions: 7148
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35065791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)