Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_I22
(1024 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 40 7e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.049
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.20
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.46
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.60
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 7.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 39.5 bits (88), Expect = 7e-04
Identities = 24/52 (46%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 973 GGGGXLGXGPXXXXKXGXXRGXGVXXGGPGGXXRGXGXGGGXPXG-GGTXGG 821
GG G G GP G G G GGPGG G G GG P G GG GG
Sbjct: 221 GGHGGFGGGPG-----GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 35.5 bits (78), Expect = 0.012
Identities = 24/66 (36%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = -1
Query: 973 GGGGXLGXGPXXXXKXGXXRGXGVXXGGPGGXXRGXGXGGGXPXG-GGTXGGXXSWGSVX 797
GG G GP G G G GG GG G G G P G GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 796 GXPPXG 779
G P G
Sbjct: 255 GGGPGG 260
Score = 33.1 bits (72), Expect = 0.065
Identities = 26/81 (32%), Positives = 26/81 (32%)
Frame = -1
Query: 925 GXXRGXGVXXGGPGGXXRGXGXGGGXPXGGGTXGGXXSWGSVXGXPPXGXEPXXXXXFGG 746
G G G GPGG G GG GG G G G P G FGG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--GGFGGGPGGFGG 249
Query: 745 GXXXGGXRXRXXGKXPGAKXG 683
G G G PG G
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGG 270
Score = 27.1 bits (57), Expect = 4.3
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = -1
Query: 871 GXGXGGGXPXGGGTXGGXXSWGSVXGXPPXGXEPXXXXXFGGGXXXGGXRXRXXGKXPGA 692
G G GG GG G +G G G FGGG G PG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 691 KXG--RXFXGG 665
G F GG
Sbjct: 247 FGGGLGGFGGG 257
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.049
Identities = 23/79 (29%), Positives = 25/79 (31%)
Frame = +1
Query: 631 PXTXPXXTGPKXPPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXP 810
P P P P AP +P+ S P APP P A PP P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKP-SVAAPPVPAPSGAPPVPKPSVAA-PPVPAPSSGIP 1179
Query: 811 XXXSPRXXHPXXXPPPRGP 867
P P PP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAP 1198
Score = 33.1 bits (72), Expect = 0.065
Identities = 32/134 (23%), Positives = 37/134 (27%)
Frame = +1
Query: 454 VPFPXSPPPXXPVCXPXXGPXAXXXXPXXGPLXXGXAPPXFSRXXXXXXXXXXXXXXXXP 633
VP P P PV P P P+ P + P
Sbjct: 1123 VPKPSVAAPPVPV--PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 634 XTXPXXTGPKXPPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXPX 813
P P PP AP +P+ S PP APP P PP P P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPPSTAPPVPTPS-AGLPPVPVPTAKAPP 1238
Query: 814 XXSPRXXHPXXXPP 855
+P P P
Sbjct: 1239 VPAPSSEAPSVSTP 1252
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/81 (25%), Positives = 24/81 (29%)
Frame = +1
Query: 631 PXTXPXXTGPKXPPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXP 810
P + P T P P P +P+ S P APP P P P P
Sbjct: 995 PLSKPVSTSPAAP-LARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053
Query: 811 XXXSPRXXHPXXXPPPRGPXP 873
S P P P P
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIP 1074
Score = 29.1 bits (62), Expect = 1.1
Identities = 31/137 (22%), Positives = 35/137 (25%), Gaps = 2/137 (1%)
Frame = +1
Query: 463 PXSPPPXXPVCXPXXGPXAXXXXPXXGPLXXGXAPPXFSRXXXXXXXXXXXXXXXXPXTX 642
P S P P+ P P PL APP P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPV-PLPSADAPPI---PVPSTAPPVPIPTSTPPVPK 1054
Query: 643 PXXTGPKXPPXXXAPX--LPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXPXX 816
P PP AP +P +P G P P A PP P P
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV 1114
Query: 817 XSPRXXHPXXXPPPRGP 867
+P P P P
Sbjct: 1115 PAPSGAPPVPKPSVAAP 1131
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +3
Query: 729 PPXKXPP-PKXXXFXGSXPXGGXPKTXPXXLXPPXVPPPXGXPPPXPXP 872
PP + PP PK P G P P PP VP P PP P P
Sbjct: 1193 PPSEAPPVPK--------PSVGVPPVPPPSTAPP-VPTPSAGLPPVPVP 1232
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +3
Query: 669 PXKXRPXFAPGXFPXXRFRXPPXKXPPPKXXXFXGSXPXGGXPKTXPXXLXPPXVPPPXG 848
P P AP P PP P P P G P P PP P G
Sbjct: 1150 PPVPAPSGAP-PVPKPSVAAPPV--PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
Query: 849 XPPPXP 866
PP P
Sbjct: 1207 VPPVPP 1212
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Frame = +3
Query: 729 PPXKXPPPKXXXFXGSXPXGGXPKTXPXXLXP----PXVPPPXGXPPPXPXP 872
PP PP G P P T P P P VP P PP P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 780 PXGGXPKTXPXXLXPPXVPPPXGXPPPXPXP 872
P G P P PP VP P PP P P
Sbjct: 1155 PSGAPPVPKPSVAAPP-VPAPSSGIPPVPKP 1184
Score = 26.6 bits (56), Expect = 5.6
Identities = 22/87 (25%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Frame = +3
Query: 627 APLNXPTXHGXXXPPXKXRPXFAPGXFPXXRFRXPPXKXP---PPKXXXFXGSXPX---- 785
AP P P +P A P PP P PP + P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 786 GGXPKTXPXXLXPPXVPPPXGXPPPXP 866
G P P PP P P P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 732 PXKXPPPKXXXFXGSXPXGGXPKTXPXXLXPPXVPPPXGXPPPXPXP 872
P P P P G P P + P VP P PP P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP--VPKPSVAAPPVPKP 1107
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.20
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = +1
Query: 667 PPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXPXXXSPRXXHP 840
PP P S PP+ PP P A PP P P P +P +P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP-SAPPPPLPASSAPSVPNP 1746
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.46
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 970 GGGXLGXGPXXXXKXGXXRGXGVXXGGPGGXXRGX--GXGGGXPXGGGTXGG 821
GG G G + G G G GG G RG G GG GG+ GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.60
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 949 GPXXXXKXGXXRGX-GVXXGGPGGXXRGXGXGGGX--PXGGGTXGG 821
GP G RG G GG GG RG G GGG GGG+ GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRG-GFGGGSRGGFGGGSRGG 177
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 911 PPPXPXFGXXXGAXP*XPPPPXVVXPR 991
PPP P G + P PPPP V R
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 774 SXPXGGXPKTXPXXLXPPXVPPPXGXPPPXP 866
S P G P P PP PP PPP P
Sbjct: 3 SLPPGNPPPPPP----PPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Frame = +3
Query: 738 KXPPPKXXXFXGSXPXGGX---PKTXPXXLXPPXVPPPXG----XPPPXPXP 872
K PPP P P P PP PPP G PPP P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 911 PPPXPXFGXXXGAXP*XPPPPXVV 982
PPP P G P PPPP V
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 911 PPPXPXFGXXXGAXP*XPPPP 973
PPP P GA P PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 925 GXXRGXGVXXGGPGGXX-RGXGXGGGXPXG-GGTXGGXXSWGSV 800
G RG GG GG RG G GGG G GG G + GSV
Sbjct: 447 GGSRGGRGGFGGRGGFGGRG-GFGGGRGRGRGGARSGNPNRGSV 489
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +3
Query: 732 PXKXPPPKXXXFXGSXPXGGXPKTXPXXLXPPXVPPPXGXPPPXPXPR 875
P PPP+ S G P P PP PP P PR
Sbjct: 187 PLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPP---PPAPPKPR 231
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Frame = +1
Query: 667 PPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXPXXXSP--RXXHP 840
PP AP P+ S PP PP P + PP P P P + P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPP---PSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Query: 841 XXXPPPRGPXP 873
PP P
Sbjct: 181 VKSPPSAPSLP 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.4
Identities = 17/67 (25%), Positives = 21/67 (31%)
Frame = +1
Query: 658 PKXPPXXXAPXLPRXXSPXGXSGPPLXXAPPQKXPXFXAXPPRXXPXKPXPXXXSPRXXH 837
P P AP LP + S PP+ P + PP P P +P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 838 PXXXPPP 858
PP
Sbjct: 452 SAPIAPP 458
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/50 (28%), Positives = 15/50 (30%)
Frame = +3
Query: 717 RFRXPPXKXPPPKXXXFXGSXPXGGXPKTXPXXLXPPXVPPPXGXPPPXP 866
R PP PP S P P P +PP PP P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 7.4
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Frame = +3
Query: 630 PLNXPTXHGXXXPPXKXRPXFAPGXFPXXRFRXPPXKXPPPKXXXFXGSXPXGGXPKTXP 809
P PT P AP P PP PP P G P
Sbjct: 462 PWQQPTQQSAVQPSNLVPSQNAP-FIPGTSAPLPPTTFAPPGVPL----PPIPGAPGMPN 516
Query: 810 XXLX-PPXVPPPXGXPPPXPXP 872
+ PP VPP PP P P
Sbjct: 517 LNMSQPPMVPPGMALPPGMPAP 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,096
Number of Sequences: 5004
Number of extensions: 23476
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -