Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_I20
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 47 4e-06
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 43 7e-05
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.005
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.41
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.72
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.7
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 8.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 46.8 bits (106), Expect = 4e-06
Identities = 34/113 (30%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
Frame = +2
Query: 569 GXXPXXXGEXGXPPXPGEXPGKTXXTKRPAXG--PAPXXKXPPXXPFFXXGPXPPXXPPP 742
G P PP P G K PA G P P P P G PP PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVG-VPPVPPPS 1214
Query: 743 KTXPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXP 901
P P P G P P K V P P + P P P P P
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSP 1267
Score = 37.9 bits (84), Expect = 0.002
Identities = 36/125 (28%), Positives = 36/125 (28%), Gaps = 9/125 (7%)
Frame = +2
Query: 569 GXXPXXXGEXGXPPXP---GEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXP----- 724
G P PP P G P P PAP P P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV-PAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 725 -PXXPPPKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXP 901
P P P PP P E P P K PP PP P TP P P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAP---PVPKPSVGVPP--VPPPSTAPPVPTPSAGLPPVPVP 1232
Query: 902 XLFXP 916
P
Sbjct: 1233 TAKAP 1237
Score = 33.1 bits (72), Expect = 0.059
Identities = 32/116 (27%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Frame = +2
Query: 569 GXXPXXXGEXGXPPXPGEXPGKTXXTKRPAXG----PAPXXKXPPXXPFFXXGPXPPXXP 736
G P PP P P +P+ PAP PP P P
Sbjct: 1138 GAPPVPKPSVAAPPVPA--PSGAPPVPKPSVAAPPVPAPSSGIPPVPK---PAAGVPPVP 1192
Query: 737 PPKTXPP-PXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXP 901
PP PP P P G P P +PP P LP P P P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP-----STAPP-VPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 31.9 bits (69), Expect = 0.14
Identities = 31/130 (23%), Positives = 33/130 (25%), Gaps = 5/130 (3%)
Frame = +2
Query: 542 APXXWXGXXGXXPXXXGEXGXPPXPGEXPGKTXXTKRPAXGPAPXXKXP-PXXPFFXXGP 718
AP P G PP P P +P+ P K P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAPPVPA--PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 719 XPPXXPPPKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXP----PXXALPXFXTPXPXXP 886
PP P PP G P P V P P P A P P P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Query: 887 XXPXPXLFXP 916
P P P
Sbjct: 1180 PVPKPAAGVP 1189
Score = 29.9 bits (64), Expect = 0.55
Identities = 27/108 (25%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Frame = +2
Query: 614 PGEXPGKTXXTKRPAXGPA-PXXKXPPXXPFFXXGPX---PPXXPPPKTXP---PPXPXG 772
P + P +K + PA P + PP P P PP P PP P
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP 1046
Query: 773 GETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXPXLFXP 916
TP +PP P +P P P P P P
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP-SGAPPVPAPSGIPP 1093
Score = 29.1 bits (62), Expect = 0.96
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = +2
Query: 665 PAPXXKXPPXXPFFXXGPX--PPXXPPPKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXP 838
P P P P G PP P P + P P P P G+ P K
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP---PVPAPSGIPPVPK-- 1096
Query: 839 PXXALPXFXTPXPXXPXXPXP 901
P A P P P P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAP 1117
Score = 28.3 bits (60), Expect = 1.7
Identities = 29/119 (24%), Positives = 31/119 (26%), Gaps = 6/119 (5%)
Frame = +2
Query: 578 PXXXGEXGXPPXPGEXPGKTXXTKR-PAXGPAPXXKXPPXXPFFXXGPX--PPXXPPPKT 748
P G P P P + PA AP P P PP P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA 1110
Query: 749 XPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXP---XXPXXPXPXLFXP 916
PP G P P V P PP P P P P P + P
Sbjct: 1111 VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 42.7 bits (96), Expect = 7e-05
Identities = 29/73 (39%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -1
Query: 914 GGKGXXXXXPGXXGRGSGXGGXXXXGGXXGG-GKPPGXFXXVPGGGFXHPXXVGG--XGF 744
GG G PG G G GG G GG G PG F PGG P GG GF
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 743 LGXVGXGGXGXXG 705
G G G G G
Sbjct: 255 GGGPGGFGGGPGG 267
Score = 31.9 bits (69), Expect = 0.14
Identities = 25/71 (35%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Frame = -1
Query: 872 RGSGXGGXXXXGGXXGGGKPPGXFXXVPGGGF-XHPXXVGGXGFLGXVGXGGXGXXGKXA 696
RG GG GG GG PPG GGF GG G G G G G
Sbjct: 183 RGHNGGGFGGFGGG-SGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
Query: 695 XXAGLFXXGXG 663
G F G G
Sbjct: 242 GGPGGFGGGLG 252
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 923 PGXGGKGXXXXXPGXXGRGSGXGGXXXXGGXXGGGKPPG 807
PG G G G G G G GG GG GG PG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGG---FGGGPGGHGGPG 272
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/106 (24%), Positives = 32/106 (30%)
Frame = +2
Query: 629 GKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRGPXKKX 808
GK+ + P PAP P P P PP PP P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA 175
Query: 809 RGVSPPRKXPPXXALPXFXTPXPXXPXXPXPXLFXPXXGKXGGRXS 946
+ +P + P +LP P P P P P L R S
Sbjct: 176 QPAAPVKSPPSAPSLPSAVPPMP--PKVPPPPLSQAPVANTSSRPS 219
Score = 28.3 bits (60), Expect = 1.7
Identities = 26/106 (24%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Frame = +2
Query: 605 PPXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPP-----PXPX 769
PP P P +K P P P PP P P P PP P P
Sbjct: 151 PPSPASAP--PIPSKAP---PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Query: 770 GGETPXRGPXKKXRGVSPPRKXPPXXA--LPXFXTPXPXXPXXPXP 901
+ P + +PP P P F P P P
Sbjct: 206 LSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVP 251
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = +2
Query: 680 KXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXAL 853
K PP P P P P P PPP P G P P G PP PP A+
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP--VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 653 PAXGPAPXXKXPPXXPFFXXGPXPPXXPP--PKTXPPPXP 766
P PAP PP P GP PP PP PPP P
Sbjct: 742 PTPAPAPI-PVPPPAPIM-GGPPPPPPPPGVAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.55
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +2
Query: 605 PPXPGEXPGKTXXTKRPAXGPAPXX--KXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGG 775
PP P P PAP PP P G PP PPP PP GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP---PPAVSAGG 789
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 653 PAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRGP 796
P PA P P P P PP PPP G P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.18
Identities = 26/113 (23%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Frame = +2
Query: 569 GXXPXXXGEXGXPPXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPP--- 739
G P PP P + + P + PP P G P PP
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN 408
Query: 740 -PKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXP 895
+T PP P P P +PP A P P P P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPS-APPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 30.7 bits (66), Expect = 0.31
Identities = 26/91 (28%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 PPXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPX--PXGGE 778
PP GK + P PP P PP PPP P G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 779 TPXRGPXKKXRGVSPPRKXPPXXALPXFXTP 871
P P R VS P PP A+P P
Sbjct: 375 QPP--PLSSSRAVSNPPAPPP--AIPGRSAP 401
Score = 30.7 bits (66), Expect = 0.31
Identities = 29/105 (27%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Frame = +2
Query: 605 PPXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPP------PKTXPPPXP 766
P P PG++ P G A PP P PP PP P + PP P
Sbjct: 389 PAPPPAIPGRSAPAL-PPLGNASRTSTPPV-------PTPPSLPPSAPPSLPPSAPPSLP 440
Query: 767 XGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXP 901
G P P ++PP A P P P P P
Sbjct: 441 MG--APAAPPLPPSAPIAPP-LPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/73 (23%), Positives = 20/73 (27%)
Frame = +2
Query: 620 EXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRGPX 799
E G T P P+ PP P PP PPP P P
Sbjct: 219 ESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV 278
Query: 800 KKXRGVSPPRKXP 838
++ K P
Sbjct: 279 SMNPAINSTSKPP 291
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.3 bits (65), Expect = 0.41
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Frame = +2
Query: 605 PPXPGEXPGKTXXTKRP----AXGPAPXXKXPPXXPFFXXGPXP-PXXPPPKTXPPPXPX 769
PP P + P + G A + PP P P P PPP T PP
Sbjct: 193 PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTN 252
Query: 770 GGETPXRGPXKKXRGVSPPRKXPPXXALP 856
+ P P + + PP A P
Sbjct: 253 TSQLPM--PSRNVNNLGSQVNIPPPPATP 279
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 686 PPXXPFFXXGPXPPXXPPPKTXPPPXPXG 772
PP P P PP PP PPP P G
Sbjct: 5 PPGNP--PPPPPPPGFEPPSQPPPPPPPG 31
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 734 PPPKTXPPPXPXGGETPXRGPXKKXRGVSPPRK 832
PP PPP P G E P + P G RK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 807 PGGFPPPXXXPPXXXSPXSXPPXXXP 884
P G PPP PP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +2
Query: 716 PXPPXXPP---PKTXPPPXPXGGETPXR 790
P PP PP P + PPP P G R
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 741 QKPXPPHXXXVXKPPXGDXXKXPGGFPPPXXXPPXXXSPXSXPPXXXP 884
Q PP PP P PPP PP P S PP P
Sbjct: 1695 QSAAPPQMSAPTPPPP------PMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/67 (25%), Positives = 19/67 (28%)
Frame = +2
Query: 740 PKTXPPPXPXGGETPXRGPXKKXRGVSPPRKXPPXXALPXFXTPXPXXPXXPXPXLFXPX 919
P + PP P P PP PP + P P P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 920 XGKXGGR 940
G R
Sbjct: 1743 VPNPGDR 1749
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 650 RPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXP 766
RP P P P P PP PP PP P
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 8.9
Identities = 19/84 (22%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Frame = +2
Query: 608 PXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPX 787
P + PG P+ PAP P P P P PP P
Sbjct: 1457 PVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPS 1516
Query: 788 RG-PXKKXRGVSPPRKXPPXXALP 856
P + P PP P
Sbjct: 1517 STLPPSQSSFAHVPSPAPPAPQHP 1540
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +2
Query: 686 PPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRG 793
PP P PP P PP P G T G
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISG 1918
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.1
Identities = 22/69 (31%), Positives = 23/69 (33%)
Frame = -1
Query: 908 KGXXXXXPGXXGRGSGXGGXXXXGGXXGGGKPPGXFXXVPGGGFXHPXXVGGXGFLGXVG 729
KG G GRG GG G GG G F GGF G G G G
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNS-RGGFGGGSRGGFGGGSRGGSRG--GFRG 184
Query: 728 XGGXGXXGK 702
G G+
Sbjct: 185 GSRGGFRGR 193
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 920 GXGGKGXXXXXPGXXGRGSGXGGXXXXGGXXGGGK 816
G G G G GRG GG G GG K
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 590 GEXGXPPXPGEXPGKTXXTKRPAXGPAPXXKXPPXXPFF 706
G G P P PG + PA P P PF+
Sbjct: 282 GPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMPNIPFY 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.146 0.498
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,068
Number of Sequences: 5004
Number of extensions: 24051
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -