Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I20
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 656 AXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXP 766
           A GP P     P  P     P P   PPP   P   P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = +2

Query: 635 TXXTKRPAXGPAPXXKXPPXXPFFXXGPXPPXXPPPKTXPPPXPXGGETPXRGP 796
           T  +++P+ G       P   P     P     P P   PPP    G  P + P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSP---QAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 741 QKPXPPHXXXVXKPPXGDXXKXPGGFPPPXXXPPXXXSPXS 863
           Q P  P       P  G     P G PP         SP S
Sbjct: 29  QSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 737 PPKTXPPPXPXGGETP 784
           PPK  PPP P     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,339
Number of Sequences: 438
Number of extensions: 5226
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)