Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I19
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   6.9  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   6.9  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +3

Query: 399 PPPPXXXXXXFFFXXKKKXPPPXXXXXFFFXKPPXPPXXFFFFFFXXKNXPXPPXGXXXK 578
           PPPP      F     ++  PP     ++  +PP PP  +          P PP      
Sbjct: 62  PPPPHQPQFNFGPGPPQQQQPPPPPQMYY--QPPPPPPPYGVNSSQPPPPPPPPPSPPPS 119

Query: 579 XXPP 590
             PP
Sbjct: 120 APPP 123


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/88 (25%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
 Frame = +1

Query: 397 SPPPPXGXXXXFFFXXKKKXPPXXXXXFFFXKNHPXPPXXF--FFFFXXXKTXPPPPXGX 570
           +PPPP G             PP          +HP PP               PPPP   
Sbjct: 275 APPPPAGPPPP-------APPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAH 327

Query: 571 XXXXXPPXXXXXKKXGGXXXXXPPXXPP 654
                PP         G     PP  PP
Sbjct: 328 PAAPAPPPPAPSPSAAGAGSGPPPPPPP 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,820,937
Number of Sequences: 37544
Number of extensions: 305959
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)