Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I17
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.34 
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   5.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   7.4  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   9.7  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    26   9.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 462  VPLSRSAHARVGACSR--PRTACPXPTHVAFPKPPKAPGQCASNLP 331
            +PL  S     GA S   P+   P P H   P  PKAPG   +N P
Sbjct: 1426 MPLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGM-VTNAP 1470


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 297 LVNENYKNQ*M-WGESKCNEFHKFIKNVV 214
           L N +YKN  +  G+ K NEFH  ++NV+
Sbjct: 313 LGNYSYKNSNLRLGDLKGNEFHIVVRNVI 341


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 342 SNLP--IHLYGNSNNTRLVNENYKN 274
           SNLP  +  Y +S+NT L+NE YK+
Sbjct: 194 SNLPKNVSFYFHSDNTVLLNEYYKS 218


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -2

Query: 445 RPRTSGCLLTPK-DRMPVXDPRRLPQTAQGTRSVRXQPSNTSLRKQQQH 302
           R R S     PK + +   D R  PQ A G+ SV   P N    K+  H
Sbjct: 391 RARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILH 439


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 432 VGACSRPRTACPXPTHVAFPKPPKAPGQCASNLPIHLYGNSNN 304
           +G C+  R   P P     P+ P    + ASN   +LYG SNN
Sbjct: 161 IGRCNGNRVLPPYPEPALLPEAPNT--REASN-NTYLYGFSNN 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,959
Number of Sequences: 5004
Number of extensions: 37982
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)