Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I17
         (1013 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific ...    32   2.9  
BC113448-1|AAI13449.1|   99|Homo sapiens late cornified envelope...    32   2.9  
BC113446-1|AAI13447.1|   99|Homo sapiens late cornified envelope...    32   2.9  
AL139247-8|CAI21686.1|   99|Homo sapiens late cornified envelope...    32   2.9  

>Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific
           protein VGF protein.
          Length = 616

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 414 PRTACPXPTHVAFPKPPKAPGQCASNLP 331
           P  A P PTHV  P+PP  P      LP
Sbjct: 494 PPRAAPAPTHVRSPQPPPPPPSARDELP 521


>BC113448-1|AAI13449.1|   99|Homo sapiens late cornified envelope 4A
           protein.
          Length = 99

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 426 ACSRPRTACPXPTHVAFPK-PPKAPGQCASNLP 331
           +C + +  C  P     PK PPK P +CAS+ P
Sbjct: 2   SCQQNQQQCQPPPKCPIPKYPPKCPSKCASSCP 34


>BC113446-1|AAI13447.1|   99|Homo sapiens late cornified envelope 4A
           protein.
          Length = 99

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 426 ACSRPRTACPXPTHVAFPK-PPKAPGQCASNLP 331
           +C + +  C  P     PK PPK P +CAS+ P
Sbjct: 2   SCQQNQQQCQPPPKCPIPKYPPKCPSKCASSCP 34


>AL139247-8|CAI21686.1|   99|Homo sapiens late cornified envelope 4A
           protein.
          Length = 99

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 426 ACSRPRTACPXPTHVAFPK-PPKAPGQCASNLP 331
           +C + +  C  P     PK PPK P +CAS+ P
Sbjct: 2   SCQQNQQQCQPPPKCPIPKYPPKCPSKCASSCP 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,093,048
Number of Sequences: 237096
Number of extensions: 1870896
Number of successful extensions: 5529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5484
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13599698196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)