Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I17
         (1013 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    32   0.75 
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    31   0.99 

>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
 Frame = -3

Query: 414 PRTACPXPTHVAFPKP-------PKAPGQCASNLP 331
           PRT CP PT  A P P       P+AP QC  + P
Sbjct: 129 PRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQP 163


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = +1

Query: 238 KFITFTFS----PHLLIFIILIY*PGVVAVSVKMYWK 336
           KFI + FS    P LL+FI ++Y PG V V ++++ K
Sbjct: 15  KFINYQFSFFTIPMLLVFIPILYIPGTVVVVLRIFSK 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,177
Number of Sequences: 27780
Number of extensions: 256726
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2667870690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)