Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I15
         (1031 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.010
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.9  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   7.8  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.010
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +1

Query: 748 SRXPPXXVXPPXPPP--PPXXPPRGXXPRXGXTPXPXAPPFXPP 873
           S+ P      P P P   P  P RG  P     P P  PP  PP
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.64
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +1

Query: 778 PXPPPPPXXPPRGXXPRXGXTPXPXAPPFXPPPGXGXAXSPXXPP 912
           P P P P   P+   P+ G  P P      PPPG      P   P
Sbjct: 21  PGPQPSPHQSPQA--PQRGSPPNPSQ---GPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.64
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 703 PXPPPXXXXPPTGAFSRXPPXXVXPPXPPPPPXXPP 810
           P P P     P       PP     P P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 868 PPPGXGXAXSPXXPPPXVPPGXGXXPPP 951
           P P      SP  P    PP     PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = -1

Query: 647 PHGEKGXXXXGGPXGXGXGXPXAGPXG 567
           PH        G P     G P  GP G
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 775  PPXPPPPP 798
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 775 PPXPPPPPXXPPRGXXP 825
           PP P PPP  PP    P
Sbjct: 338 PPKPAPPP-PPPSSSGP 353


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 909 PPPGXPRXGXXPXPPXPG 962
           P P  P+ G  P P  PG
Sbjct: 22  PLPNVPQPGRRPFPTFPG 39


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 909 PPPGXPRXGXXPXPPXPG 962
           P P  P+ G  P P  PG
Sbjct: 8   PLPNVPQPGRRPFPTFPG 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,961
Number of Sequences: 438
Number of extensions: 7957
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34467615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)