Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I14
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0040 + 11816056-11819069,11819837-11820428                       29   6.5  
12_02_1182 + 26751345-26751836                                         28   8.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  

>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 759 RSXPPXXGXXPXPPVXPDRXPLSGN 833
           RS PP  G  P PP  P   P++G+
Sbjct: 35  RSWPPLCGRFPAPPPPPPTAPVAGD 59


>12_02_1182 + 26751345-26751836
          Length = 163

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 700 KGERRTGXPVSGRVGTGERTGELPGGNXWXLYSPVG 593
           +G++R   P +  +GTGE TG+  G   W  ++  G
Sbjct: 12  RGKKRALLPHTMAMGTGEPTGKAKGRRWWRNWTVTG 47


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,886
Number of Sequences: 37544
Number of extensions: 427200
Number of successful extensions: 1224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)