Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I12
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    32   0.093
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   4.6  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    27   4.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.1  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    26   6.1  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   6.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   8.1  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 349 NSPHDLALHRINGTFRPLHDTLHRHRRSPPEISSTTILQKSCLSPREILE 498
           N   ++ LH + G    +   L R RR+ PE+ S   LQK  L+P + L+
Sbjct: 553 NQASEVLLHSLMGRATSMFQMLDRVRRASPELGSVIRLQKG-LNPHQFLD 601


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 262 FNKYGDKGIITFEGFEHLLAS--LGLGGRVFNSPHDLALHRINGTFRPLHDTLHRHRRSP 435
           F+K  D+  +  E F  +L +    +  RVF + H+L++H +        D L  HR+  
Sbjct: 19  FSKLQDRSSLLGEKFTKVLVANRSEIAIRVFRTAHELSMHTV--AIYSYEDRLSMHRQKA 76

Query: 436 PE 441
            E
Sbjct: 77  DE 78


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 20  ISLYGNSLRF*LLDRRSTSCDSVVQRRWAATGDP 121
           I+ +GNSLR  ++D    + D +V+R   ATG P
Sbjct: 160 IAAHGNSLRALIMDLEGLTGDQIVKRE-LATGVP 192


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +2

Query: 374  IASMEPLGHFTTPCTDTDALRQKLALQPYYRNHAFHREKYWKCTEWKTSPGLITIRPKTF 553
            I S+E   H T+P       R      P+   HA+ + K  +   + T   L+     T 
Sbjct: 1141 IQSLEKTSHNTSPSGICKGKRIVSVALPFLLKHAYDQAKEVRSLTYSTITELVRTGNSTL 1200

Query: 554  LEMCPALV 577
                PA++
Sbjct: 1201 TSFVPAIM 1208


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 256 KIFNKYGDKGIITFEGFEHLLASLG 330
           K+F+K G+ G IT E   H+L SLG
Sbjct: 92  KVFDKDGN-GYITVEELTHVLTSLG 115


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 787 VATKGSDXYXYQKMQYVAKYFDFSSGTIATPRSPGH 680
           VA KG   Y + K     KY DF+SG   T     H
Sbjct: 57  VAAKGEGSYLFDKEG--RKYIDFTSGVAVTSLGHAH 90


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 532 YHKTENILGDVSCTCLSIGST 594
           Y +T+ IL  ++C C SIG T
Sbjct: 523 YTQTKEILAKITCFCSSIGLT 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,882
Number of Sequences: 5004
Number of extensions: 72414
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)