Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I12
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   8.5  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 280 KGIITFEGFEHLLASLGLG 336
           KG   F+GF HL A L +G
Sbjct: 83  KGYTLFKGFVHLGAGLAVG 101


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 476 FHREKYWKCTEWKT 517
           F+ E YW+C + KT
Sbjct: 60  FNDENYWQCNDKKT 73


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 415 HRHRRSPPEISSTTILQKSCLSPREILEVYGMENEPGVDYHKTENILGDVS 567
           H H    P     TILQ +C   R  L +   E +   D  K+E +   V+
Sbjct: 466 HPHPPETPGPQVETILQNACFCARNELMMILKEIKIITDQLKSEELNAKVT 516


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 326 KLANKCSNPSNVMMPLSPYLLNILSMKYR 240
           K AN+         PLSP+LLN+   ++R
Sbjct: 101 KFANRGLGVFERTEPLSPHLLNLEVERWR 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,250
Number of Sequences: 438
Number of extensions: 5472
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)