Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I11
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    43   2e-04
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    42   6e-04
Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger pro...    28   7.6  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score =  107 bits (257), Expect = 1e-23
 Identities = 59/153 (38%), Positives = 98/153 (64%), Gaps = 6/153 (3%)
 Frame = +1

Query: 385 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 564
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 565 RSIIRQAPKKLVLIEKDPRFLPSLELLADACRDKVDVDIITGDILKTD*VNLYR---MMQ 735
           R+I+     +L ++E D RF+P L+ LA+A   ++ +     D L+T+  ++++      
Sbjct: 66  RAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIH--HQDALRTEIGDIWKNETARP 123

Query: 736 KSL---VGSPPPVHLIGNLPFSVSTILIIXXWR 825
           +S+     + P +H+IGNLPF++++ LII   R
Sbjct: 124 ESVDWHDSNLPAMHVIGNLPFNIASPLIIKYLR 156


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +1

Query: 457 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 636
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A K ++  E DPR +  +
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA-KTVIACEIDPRMIAEV 88

Query: 637 E--LLADACRDKVDVDIITGDILKTD 708
           +  ++    ++K+ V+   GD++K +
Sbjct: 89  KKRVMGTPLQNKLQVN--GGDVMKME 112


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/58 (31%), Positives = 38/58 (65%)
 Frame = +3

Query: 141 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFL 314
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFL 112


>Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical
           protein F45B8.4 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 727 MMQKSLVGSPPPVHLIGNLPF 789
           MMQ+++   PPPV+++GN PF
Sbjct: 61  MMQQTMP-RPPPVNILGNFPF 80


>U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger
           protein PAG-3 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 727 MMQKSLVGSPPPVHLIGNLPF 789
           MMQ+++   PPPV+++GN PF
Sbjct: 61  MMQQTMP-RPPPVNILGNFPF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,529,940
Number of Sequences: 27780
Number of extensions: 378298
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)