Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I10
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    69   4e-12
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    69   4e-12
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    69   4e-12
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    30   2.7  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 37/73 (50%), Positives = 43/73 (58%)
 Frame = +3

Query: 336 AVRSFXTTSVTKDIDSXXXXXXXXXXXXXVAGSXXXIXTXFGSLIIGYAKNPSLKQ*LFS 515
           A R   TT   KDIDS             VAGS   I   FG+L+IGYA+NPSLKQ LFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 516 YAILGXXLTDSHG 554
           YAILG  L+++ G
Sbjct: 66  YAILGFALSEAMG 78


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 37/73 (50%), Positives = 43/73 (58%)
 Frame = +3

Query: 336 AVRSFXTTSVTKDIDSXXXXXXXXXXXXXVAGSXXXIXTXFGSLIIGYAKNPSLKQ*LFS 515
           A R   TT   KDIDS             VAGS   I   FG+L+IGYA+NPSLKQ LFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 516 YAILGXXLTDSHG 554
           YAILG  L+++ G
Sbjct: 66  YAILGFALSEAMG 78


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 37/73 (50%), Positives = 43/73 (58%)
 Frame = +3

Query: 336 AVRSFXTTSVTKDIDSXXXXXXXXXXXXXVAGSXXXIXTXFGSLIIGYAKNPSLKQ*LFS 515
           A R   TT   KDIDS             VAGS   I   FG+L+IGYA+NPSLKQ LFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 516 YAILGXXLTDSHG 554
           YAILG  L+++ G
Sbjct: 90  YAILGFALSEAMG 102


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
            see also lmb-protein 2 protein.
          Length = 1535

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
 Frame = -1

Query: 488  VLGIADDEGAEXCXNXXSGTSYSXCRCTSXNEFGSRVNVLSDXC----GXEGPHCRELCR 321
            V+GI  D+ A    N  SG     C C      G+  +V +  C    G  G  C + C 
Sbjct: 907  VIGIQCDQCAHGFYNITSGLGCQECNCDPLGSEGNTCDVNTGQCQCKPGVTGQRC-DRCA 965

Query: 320  DSRYHXCMGGYSCK 279
            D  YH       C+
Sbjct: 966  D--YHFGFSANGCQ 977


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
 Frame = +2

Query: 155  FSGVLCXRAPXLIKTKC--CLAXXLIAPDSXVCHLLQLCTG------ATTCNCTHPYTXG 310
            FSG  C R   L +T    C       P + +C  L   TG        +C+  + +  G
Sbjct: 1915 FSGTYCERNENLCETNLVVCKNGGTCNPKTGLCVCLPDYTGDYCDNQIHSCSDINCFNGG 1974

Query: 311  TCCPYTALCSAVLP 352
            TC  Y A C A LP
Sbjct: 1975 TCIDYNATC-ACLP 1987


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,638
Number of Sequences: 27780
Number of extensions: 203589
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)