Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_I08
         (1140 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.                 31   7.8  
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ...    31   7.8  
X13783-1|CAA32030.1|  714|Homo sapiens alpha-1 type 2 collagen (...    31   7.8  
M63281-1|AAA52038.1|  207|Homo sapiens type II collagen protein.       31   7.8  
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ...    31   7.8  
J00116-1|AAA51997.1|  456|Homo sapiens COL2A1 protein.                 31   7.8  
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph...    31   7.8  

>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
          Length = 1160

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847  PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
            PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 1075 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 1120


>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
            alpha-1 type II collagen. ).
          Length = 1418

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847  PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
            PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 1075 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 1120


>X13783-1|CAA32030.1|  714|Homo sapiens alpha-1 type 2 collagen (714
           AA) protein.
          Length = 714

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847 PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
           PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 644 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 689


>M63281-1|AAA52038.1|  207|Homo sapiens type II collagen protein.
          Length = 207

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847 PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
           PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 63  PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 108


>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
            protein.
          Length = 1487

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847  PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
            PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 1144 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 1189


>J00116-1|AAA51997.1|  456|Homo sapiens COL2A1 protein.
          Length = 456

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847 PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
           PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 113 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 158


>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
            (primary osteoarthritis, spondyloepiphyseal dysplasi
            protein.
          Length = 1487

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 847  PPXXSGDRXPRXRAXPSGATGXPXXXXCPSNRPGXQRXXXXXXPPXP 707
            PP  SGD+     A PSG  G P     PS + G         PP P
Sbjct: 1144 PPGPSGDQGASGPAGPSGPRGPPGPVG-PSGKDGANGIPGPIGPPGP 1189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,651,406
Number of Sequences: 237096
Number of extensions: 800237
Number of successful extensions: 1326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15921597888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)